Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00204 ATGCTTACTCATAGTGGTGAGGCTTATGATGAAGAAGAATCTGCTGCAAGAGCATATGATTTGGCTGCACTTAAATATTGGGGAGCATCAACTTTCACCAATTTTCAGGTATCCGATTATGAGAAAGAGATAGAAATAATGAATACTATGACCAAAGAGGAGTATTTGGCCACATTAAGAAGGCATCATCATAATGGTAGATGGGAAGCAAGAATAGGAAGAGTGTTTGGAAACAAATATCTCTATCTTGGAACCTATAGTACACAAGACGAAGTTGCAAGAGCTTACGACATAGCTGCAATTGAGTATAGAGGAATCCATGCTGTAACAAACTTTGAATTAAGCAGTTACATAAAATGGTTAAAGCCAGAAAGCACCACAGAACCAAACCATGAATCACTAGCACTGCAAAAAGAGTCTCAAACAATAGCATCGGTGAATAACTCGACTCTATTACAAGAATCAAAGTTATTAGCCCTTCAAAAGAGCTTTTTCATTCAAGATTATAATCTGAATTCCATTGAAATCCAAGAATCATCATTTGAGAACAAGAACTACAGTTTCTTGAGCAACAAGTCAACTTCTCCCACCGCGCTTAGTCTTCTCCTTCGATCTTCGTTGTTTAAGGATTTGCTTGAAAAGAATTCAAATGTATCTAAGGATGAAGTCGCGAAAGGGCAACAAATAGCTAGTGATGATGAACTTGGAGAAATCTTCTACGAGGGTATTGGCAATATCTCATTTGACTTTGATCCCAATCGATGCAGCATAAAATTGCAAGAAAGAGACTTACAGTCAATATTCTATACATAG 813 0.3702 MLTHSGEAYDEEESAARAYDLAALKYWGASTFTNFQVSDYEKEIEIMNTMTKEEYLATLRRHHHNGRWEARIGRVFGNKYLYLGTYSTQDEVARAYDIAAIEYRGIHAVTNFELSSYIKWLKPESTTEPNHESLALQKESQTIASVNNSTLLQESKLLALQKSFFIQDYNLNSIEIQESSFENKNYSFLSNKSTSPTALSLLLRSSLFKDLLEKNSNVSKDEVAKGQQIASDDELGEIFYEGIGNISFDFDPNRCSIKLQERDLQSIFYT 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00204 270 SUPERFAMILY DNA-binding domain 61 114 IPR016177 GO:0003677
Vivi6g00204 270 Gene3D AP2/ERF domain 4 38 IPR036955 GO:0003700|GO:0006355
Vivi6g00204 270 Gene3D AP2/ERF domain 58 115 IPR036955 GO:0003700|GO:0006355
Vivi6g00204 270 ProSiteProfiles AP2/ERF domain profile. 54 113 IPR001471 GO:0003700|GO:0006355
Vivi6g00204 270 SMART rav1_2 61 119 IPR001471 GO:0003700|GO:0006355
Vivi6g00204 270 SMART rav1_2 4 42 IPR001471 GO:0003700|GO:0006355
Vivi6g00204 270 ProSiteProfiles AP2/ERF domain profile. 8 36 IPR001471 GO:0003700|GO:0006355
Vivi6g00204 270 Pfam AP2 domain 60 105 IPR001471 GO:0003700|GO:0006355
Vivi6g00204 270 SUPERFAMILY DNA-binding domain 9 38 IPR016177 GO:0003677
Vivi6g00204 270 CDD AP2 61 115 IPR001471 GO:0003700|GO:0006355
Vivi6g00204 270 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 7 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00204 Vivi-Chr6 5148872 5150882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00204 8 145 AP2-EREBP Transcription Factor Family AT3G54320 55.625 8.70e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi6g00204 AP2 3.1e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00204 - - lja:Lj1g3v2952280.1 339.347