Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00202 ATGGAATTACTGGGTTTGGAAAACTATAGTTCTTTGCTTGATGTACCGCAACTATCAACCATGTCTGCGATGAGTCATCATCAAACTACAGTTAAATCTTCATCTGATACGTATACTGGAAAAGATTGTTCTGAGGTTTTGAATCAACTGCCTCAAACTCCTAACTCTTGCTCGATTTCATCGGCTTCTAGTGAAGCAGTTAATGATGAACAATGCAGTAAGACTCTTGTTGACCAAGTCCAAGAAAATGAAGATGAAGAAGAAAAACTAAAAACCAGTAAACAGTTGAAGACTAAGAAGACAAATCAAAAGAGACAGAGAGAACCAAGATTCGCGTTCATGACGAAAAGCGAGGTGGATCATCTGGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAAGCTGTCAAGAACAGCCCCTTTCCAAGGAGCTATTATCGCGGCACCACTGTTTCATGTAATGTGAAGAAACGTGTGGAGCGTTCTTATACTGATCCAACCATTGTAGTCATAACTTATGAAGGCCAACACATTCATCCAAGTCCAGCTATGTCCCGTTCCGCTTTCGCCGGAGTTCAAATACCACCACCGACCGCTGTTTCCGGTGGGTTTCCTACTAACTTTGGTTCAATTTTGCAAGGGAACTACTTATCACAGTATCAGCAGCAACAGCACCATCATCAACATCAACAGCTATTGGTTAATACATTGTCCTCTTTGAGTAACCCTTATAATTATAATTCTTCTGCTTTTACTCAAGAGAGGAAGCTTTGTAATCCAGGGGCAACTACTTCCTTTCTTAGGGACCATGGTCTTCTTCAAGATGTTGTTCCTTCACATATGTTAAAGGAAGAGTAA 858 0.4079 MELLGLENYSSLLDVPQLSTMSAMSHHQTTVKSSSDTYTGKDCSEVLNQLPQTPNSCSISSASSEAVNDEQCSKTLVDQVQENEDEEEKLKTSKQLKTKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRGTTVSCNVKKRVERSYTDPTIVVITYEGQHIHPSPAMSRSAFAGVQIPPPTAVSGGFPTNFGSILQGNYLSQYQQQQHHHQHQQLLVNTLSSLSNPYNYNSSAFTQERKLCNPGATTSFLRDHGLLQDVVPSHMLKEE 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00202 285 ProSiteProfiles WRKY domain profile. 117 182 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi6g00202 285 PIRSF WRKY_txn_fact_IIc 1 285 IPR017396 GO:0003700
Vivi6g00202 285 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 37 229 IPR044810 GO:0003700
Vivi6g00202 285 SMART WRKY_cls 122 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi6g00202 285 SUPERFAMILY WRKY DNA-binding domain 114 182 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi6g00202 285 Coils Coil 76 103 - -
Vivi6g00202 285 Gene3D WRKY domain 107 183 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi6g00202 285 MobiDBLite consensus disorder prediction 80 106 - -
Vivi6g00202 285 Pfam WRKY DNA -binding domain 123 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi6g00202 285 FunFam WRKY transcription factor 57 108 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00202 Vivi-Chr6 5127232 5132238 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00202 43 285 WRKY Transcription Factor Family AT2G47260 52.000 1.07e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi6g00202 WRKY 1.8e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00202 - - gmx:732591 346.665