Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00200 ATGGCAATGATGATAGAGAATGAAGTGTGTTTGAGAAAGAGTCAAAGGTCCATGGAAGAAAAAGAGGTTAAAGGAGCACGTTGTGTTAAGAGACAAAGAAGAGAACATGCTGTTGCACCAAAAATAAGAGATGATAACCATAACCAAAAGCTTCATGTTGGTGTAACTGAGAATTGTGCAACTAATACTACAAAGAGAAGCTCAAAATTTCGTGGTGTTAGCAGGCATAGATGGACGGGTAGATACGAAGCTCACTTGTGGGACAAGCTTTCTTGGAACATAACACAAAAGAAGAAAGGGAAACAAGGGGCTTATGATGAAGAAGAATCTGCTGCAAGAGCTTATGATTTGGCTGCACTTAAATATTGGGGAACATCAACTTTCACCAATTTTCAGGTATCAGATTATGAGAAAGAGATAGAAATAATGAATACTATGACCAAAGAGGAGTATTTGGCCACATTAAGAAGAAAAAGCAGTGGATTTTCAAGAGGTGTTTCAAAGTATAGAGGTGTAGCAAGGCATCATCATAATGGTAGATGGGAAGCAAGAATAGGAAGAGTTTTTGGAAACAAATATCTCTATCTTGGAACCTATAGTACACAAGAGGAAGCCGCTCGAGCCTACGACATAGCTGCAATTGAGTATAGAGGAATCCATGCTGTAACAAACTTTGAATTAAGCAGTTACATAAAATGGTTAAAGCCAGAATGTTCTGTAGAACCAAACCATGAATCACTAGCACTACAAAGAGAGTCTCAAACAATAGCATCGGTGAATAACTCGACTCTATTGCAAGAATCAAAGTTATTAGCCCTTCAAAAGAGCTTTTTCATTCCAGATTATAATATGAATTCTACCGAAAACCAAGAATCATCACTTGAAAACAAAAACTATAGTTTCTTGAGTAACAAGTCAACTTCTCCAACCGCGCTTAGTCTTCTCCTTCGATCTTCGTTGTTTAAGGAATTGCTTGAAAAGAATTCAAATGTATCCGAGGATGAAGTTGCGAAAGAGCAACAGATAGCTAGTGATGATGAACTTGGAGAAATCTTTTATGATGGTATTGGAAATATCTCATTTGACTTTGATCCCAATCGATGCAGCATAGAATTGCAAGAAAGAGACTTACATTCAATGTTTTTTACATAG 1152 0.3707 MAMMIENEVCLRKSQRSMEEKEVKGARCVKRQRREHAVAPKIRDDNHNQKLHVGVTENCATNTTKRSSKFRGVSRHRWTGRYEAHLWDKLSWNITQKKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFQVSDYEKEIEIMNTMTKEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGIHAVTNFELSSYIKWLKPECSVEPNHESLALQRESQTIASVNNSTLLQESKLLALQKSFFIPDYNMNSTENQESSLENKNYSFLSNKSTSPTALSLLLRSSLFKELLEKNSNVSEDEVAKEQQIASDDELGEIFYDGIGNISFDFDPNRCSIELQERDLHSMFFT 383
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00200 383 SMART rav1_2 168 232 IPR001471 GO:0003700|GO:0006355
Vivi6g00200 383 SMART rav1_2 69 138 IPR001471 GO:0003700|GO:0006355
Vivi6g00200 383 FunFam AP2-like ethylene-responsive transcription factor 167 228 - -
Vivi6g00200 383 SUPERFAMILY DNA-binding domain 167 227 IPR016177 GO:0003677
Vivi6g00200 383 ProSiteProfiles AP2/ERF domain profile. 69 132 IPR001471 GO:0003700|GO:0006355
Vivi6g00200 383 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Vivi6g00200 383 PRINTS Ethylene responsive element binding protein signature 208 228 IPR001471 GO:0003700|GO:0006355
Vivi6g00200 383 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 44 288 - -
Vivi6g00200 383 CDD AP2 167 228 IPR001471 GO:0003700|GO:0006355
Vivi6g00200 383 ProSiteProfiles AP2/ERF domain profile. 168 226 IPR001471 GO:0003700|GO:0006355
Vivi6g00200 383 CDD AP2 68 134 IPR001471 GO:0003700|GO:0006355
Vivi6g00200 383 Pfam AP2 domain 167 218 IPR001471 GO:0003700|GO:0006355
Vivi6g00200 383 Pfam AP2 domain 68 124 IPR001471 GO:0003700|GO:0006355
Vivi6g00200 383 Gene3D AP2/ERF domain 68 134 IPR036955 GO:0003700|GO:0006355
Vivi6g00200 383 Gene3D AP2/ERF domain 167 228 IPR036955 GO:0003700|GO:0006355
Vivi6g00200 383 SUPERFAMILY DNA-binding domain 68 134 IPR016177 GO:0003677
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vivi6g00200 Vivi-Chr6 5115520 5117793 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00200 65 230 AP2-EREBP Transcription Factor Family AT5G57390 67.456 7.28e-79 248
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vivi6g00200 AP2 8.8e-10 CL0081
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g00200 6 5115520 5117793 Vivi6g00200 6 5115520 5117793 ECH