Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00190 ATGGGTTATCTAAGAAAAGCTTCAAAAACCCTAAACCAATCAAATTGCATTTCATTACTATTCAATTTGAATTTCAATTTCAATTTGACACCATTAACAAGTAGAATAACGCATCAACGATTTTCCTTAACGCGTGCACTTTTCTGCACCCAATCACGTCAAAGTAGCACCAAGGAGAAAGCTGTTATAGATTTGAGTCAGTACCCTCCAGAGCTTGTGAGGAATTTCTCGATAATTGCGCATGTGGATCATGGAAAATCTACTCTTGCTGATCGGCTTTTGGAGCTTACTGGGACTATTAAGAAAGGACTTGGGCAGCCTCAGTATCTTGATAAATTGCAGGTGGAGAGAGAAAGGGGGATCACGGTTAAAGCTCAGACTGCAACAATGTTCTATAAGAACATCATAAATGGTGTTGATTGTAGCGATGGAAAGGAATCACCTAATTATTTGCTGAATCTTATCGACACTCCCGGACATGTAGATTTCAGTTATGAAGTGTCAAGGTCACTAGCCGCTTGTCAAGGTGTGCTTTTGGTTGTTGACGCAGCTCAAGGAGTTCAAGCGCAAACCGTTGCTAACTTTTACCTTGCCTTTGAATCGAACTTATCAATTATACCTGTCATAAACAAGATAGATCAGCCAACTGCTGATCCTGACCGTGTTAAAGCGCAATTGAAATCGATGTTTGATCTTGACCCAGACGATGCATTGCTAACATCGGCTAAAACTGGGATGGGTCTTGAACATGTTCTTCCAGCAGTCATAGAGCGTATACCTCCACCTCCTGGGAAGAGTGATTCTCCTTTGCGTATGCTTTTACTTGATTCGTATTTTGATGAATACAGAGGGGTGATATGCCATGTTGCTGTCGTTGATGGTGCCCTGCGCAAGGGGGATAAGATTTCTTCAGCGGCCACTGGTAAATCATACGAAGCTTTGGATATAGGCATCATGCATCCTGAACTTACTCCTACCGGAATCTTGTTTACTGGACAAGTCGGTTATGTTATAAGTGGCATGCGGTCAACCAAAGAGGCACGTATTGGAGATACAATTTACCATTCACGAAGCACTGTTGATATAGAACCTCTTCCAGGCTTCAAAGCAGCAAAGCACATGGTTTTTTCTGGTCTTTTTCCAGCGGATGGATCTGATTTCGAACTACTTAACCATGCAATAGAGAAGCTTACTTGCAATGATGCCAGTGTCTCTGTCGCTAAAGAAACTAGCACTGCTCTAGGTCTAGGGTTCAGGTGTGGATTTTTAGGCCTTCTGCACATGGATGTTTTTCATCAAAGGCTTGAACAGGAATATGGAGCCCATATTATCTCAACTGTTCCTACTGTGCCTTATATATACGAGTATGCTGATGGAAGCAAATTAGAAGTTCAGAATCCCGCTGCATTACCGTCTAATCCCAAGCAACGAGTGGTAGCCTGTTGGGAACCCACAGTAATAGCTACTATAGTTATTCCTAGTGAGTATGTCGGAGCTGTTATCACCCTTGTCTCCGAACGTAGGGGGGAACAGTTAGAGTACTCGTTCATTGACAGTCAACGAGTTTTCTTGAAGTATCGTCTTCCTTTGAGGGAAATTGTTATTGACTTTTATAATGAATTGAAGAGTATAACATCAGGTTATGCATCATTTGATTATGAAGACTCAGATTATCAGGCATCTGATCTGGTGAAACTCGATATTCTCTTGAATGGACAACCAGTTGATGCAATGGCAACCATTGTTCATAACTCGAAAGCGTATCGTGTTGGACGTGAATTAGTGGAGAAATTGAAGAAAGTCATAGACAGGCAAATGTTCGAGATATCCGTACAAGCCGCCATTGGGTCAAAAATTATAGCAAGAGAGACCATTACAGCTATGAGAAAAAATGTTCTTGCCAAGTGTTATGGCGGTGATATAACACGAAAGAGGAAGCTTTTGGAGAAGCAAAAGGAAGGGAAAAAGCGAATGAAACGTGTTGGTTCCGTTGATATACCACAAGAAGCATTCCATGAACTATTGAAGGTTTCATAG 2037 0.4158 MGYLRKASKTLNQSNCISLLFNLNFNFNLTPLTSRITHQRFSLTRALFCTQSRQSSTKEKAVIDLSQYPPELVRNFSIIAHVDHGKSTLADRLLELTGTIKKGLGQPQYLDKLQVERERGITVKAQTATMFYKNIINGVDCSDGKESPNYLLNLIDTPGHVDFSYEVSRSLAACQGVLLVVDAAQGVQAQTVANFYLAFESNLSIIPVINKIDQPTADPDRVKAQLKSMFDLDPDDALLTSAKTGMGLEHVLPAVIERIPPPPGKSDSPLRMLLLDSYFDEYRGVICHVAVVDGALRKGDKISSAATGKSYEALDIGIMHPELTPTGILFTGQVGYVISGMRSTKEARIGDTIYHSRSTVDIEPLPGFKAAKHMVFSGLFPADGSDFELLNHAIEKLTCNDASVSVAKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHIISTVPTVPYIYEYADGSKLEVQNPAALPSNPKQRVVACWEPTVIATIVIPSEYVGAVITLVSERRGEQLEYSFIDSQRVFLKYRLPLREIVIDFYNELKSITSGYASFDYEDSDYQASDLVKLDILLNGQPVDAMATIVHNSKAYRVGRELVEKLKKVIDRQMFEISVQAAIGSKIIARETITAMRKNVLAKCYGGDITRKRKLLEKQKEGKKRMKRVGSVDIPQEAFHELLKVS 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00190 678 Pfam Elongation factor G C-terminus 483 568 IPR000640 -
Vivi6g00190 678 CDD EF4_II 270 355 - -
Vivi6g00190 678 CDD EF4_III 373 448 - -
Vivi6g00190 678 FunFam Elongation factor 4 70 264 - -
Vivi6g00190 678 Pfam GTP-binding protein LepA C-terminus 570 676 IPR013842 -
Vivi6g00190 678 NCBIfam small GTP-binding protein domain 77 250 IPR005225 GO:0005525
Vivi6g00190 678 PANTHER TRANSLATION FACTOR GUF1-RELATED 45 677 IPR006297 GO:0005525
Vivi6g00190 678 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 284 IPR027417 -
Vivi6g00190 678 Hamap Elongation factor 4 [lepA]. 69 678 IPR006297 GO:0005525
Vivi6g00190 678 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 71 263 IPR000795 GO:0003924|GO:0005525
Vivi6g00190 678 Gene3D - 71 264 IPR027417 -
Vivi6g00190 678 Pfam Elongation factor Tu GTP binding domain 73 260 IPR000795 GO:0003924|GO:0005525
Vivi6g00190 678 FunFam Translation factor GUF1, mitochondrial 562 636 - -
Vivi6g00190 678 SUPERFAMILY Translation proteins 261 360 IPR009000 -
Vivi6g00190 678 CDD lepA_C 483 562 IPR035654 -
Vivi6g00190 678 CDD LepA 74 262 - -
Vivi6g00190 678 FunFam Translation factor GUF1, mitochondrial 448 560 - -
Vivi6g00190 678 FunFam Translation factor GUF1, mitochondrial 265 363 - -
Vivi6g00190 678 Gene3D - 562 636 IPR038363 -
Vivi6g00190 678 SUPERFAMILY EF-G C-terminal domain-like 374 451 IPR035647 -
Vivi6g00190 678 Gene3D Translation factors 265 362 - -
Vivi6g00190 678 PRINTS GTP-binding elongation factor signature 75 88 IPR000795 GO:0003924|GO:0005525
Vivi6g00190 678 PRINTS GTP-binding elongation factor signature 118 126 IPR000795 GO:0003924|GO:0005525
Vivi6g00190 678 PRINTS GTP-binding elongation factor signature 205 214 IPR000795 GO:0003924|GO:0005525
Vivi6g00190 678 PRINTS GTP-binding elongation factor signature 153 163 IPR000795 GO:0003924|GO:0005525
Vivi6g00190 678 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 111 126 IPR031157 -
Vivi6g00190 678 FunFam Translation factor GUF1, mitochondrial 366 447 - -
Vivi6g00190 678 Gene3D - 448 560 - -
Vivi6g00190 678 NCBIfam translation elongation factor 4 73 677 IPR006297 GO:0005525
Vivi6g00190 678 SUPERFAMILY EF-G C-terminal domain-like 482 576 IPR035647 -
Vivi6g00190 678 Gene3D Elongation Factor G (Translational Gtpase), domain 3 366 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00190 Vivi-Chr6 4943965 4948627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00190 73 214 Eukaryotic Initiation Factors Gene Family AT1G56070 40.972 4.99e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00190 K21594 - gmx:100781092 1185.24