Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00187 ATGGCAAGTAAAATTGCCATTATTTTCTTGGTTTTTGCTATTGCTATTCCATGCTTTGAAGCTGGTATAGCTGAGTTTGATGATTATCTTAAAGCACAAGCTGATTTAGCTCGTGATATTGCTCTTAAGTCTTATATTCCTAATCCAGAAAATATTACAACCGAGATCAATCTACATGTCCATAGGGCTATGGAAGAGTCAATGGCGGAGGAATATTCAAATAGCACAAGGAGGGAACTAAATCAAGGAGGACATAAACGCCGAGGTGGTAAAGAACAACCTTGCATGGCCTCTAATCCAATTGACCGTTGTTGGAGGTGTAACAAGGATTGGGCCAAAGATCGTCAAAAGTTAGCCAAATGTGGTAAAGGTTTCGGTAGAAAGGCCGTAGGAGGACTTGGTGGAAGGTTCTATGTTGTCACAGATCCTTCCGACAATGATATGGTTAACCCAAAACCTGGCACTCTCCGTTTTGGGGCCGTTCAAAAGGGACCACTTTGGATTATTTTTGCACATAGCATGGTCATTAGATTGAATCAAGAGTTGATGGTTTCATCCGACAAGACAATCGACGGTCGTGGTGCTGAAGTTCATATTAGGGATGGTGCTGGAATTACAATGCAATTCGTTAACAATGTCATTATTCATGGTCTTCACCTAAAGAACATTAAGGCTAAGAATGGCGGTATGATTAGAGATGCTTTTGATCATGTTGGACTAAGAACAAGGAGCGATGGCGATGCCCTCTCCGTCTTTGGTTCATCAAACATCTGGATTGATCATATTTCTCTATCCGAATGTGAGGATGGTCTTATTGATGTTATTCAAGGCTCTACCGCAATTACCATCTCAAATTGCCATATGACAAAACATAATGATGTTATGTTGTTCGGAGCTAGTGATAAATACACCGAAGACAAGATTATGCAAATCACAGTTGCATTCAACCATTTTGGACAAGGATTAATCCAAAGAATGCCAAGATGCAGATGGGGATTTTTCCATGTCTTGAACAACGATTACACACATTGGATCATGTACGCAATTGGTGGAAGCTCCGGTCCAACAATTCTCAGTCAAGGAAACCGATTCATCGCTCCTAACAACAATGCTGCAAAGATAGTCACACATAGAGATTATGCAGCCGAAAGTGTTTGGTCGCAATGGCAATGGAGATCAGAAGGTGATATGTTCATGAATGGTGCAACATTTATTCAATCTGGTGCTCCTATTAAGAATCTCCCATTCAAGAAAGGGTATCTGATGAAACCAAGACATGGATCAGAAGCTAATAGGCTTACACGCTTTGCTGGGGCACTTAGTTGCAAGGTGGGTAGGCCTTGTTAG 1347 0.412 MASKIAIIFLVFAIAIPCFEAGIAEFDDYLKAQADLARDIALKSYIPNPENITTEINLHVHRAMEESMAEEYSNSTRRELNQGGHKRRGGKEQPCMASNPIDRCWRCNKDWAKDRQKLAKCGKGFGRKAVGGLGGRFYVVTDPSDNDMVNPKPGTLRFGAVQKGPLWIIFAHSMVIRLNQELMVSSDKTIDGRGAEVHIRDGAGITMQFVNNVIIHGLHLKNIKAKNGGMIRDAFDHVGLRTRSDGDALSVFGSSNIWIDHISLSECEDGLIDVIQGSTAITISNCHMTKHNDVMLFGASDKYTEDKIMQITVAFNHFGQGLIQRMPRCRWGFFHVLNNDYTHWIMYAIGGSSGPTILSQGNRFIAPNNNAAKIVTHRDYAAESVWSQWQWRSEGDMFMNGATFIQSGAPIKNLPFKKGYLMKPRHGSEANRLTRFAGALSCKVGRPC 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00187 448 MobiDBLite consensus disorder prediction 70 94 - -
Vivi6g00187 448 SUPERFAMILY Pectin lyase-like 99 439 IPR011050 -
Vivi6g00187 448 Pfam Pectate lyase 181 364 IPR002022 -
Vivi6g00187 448 Gene3D - 98 441 IPR012334 -
Vivi6g00187 448 SMART amb_all 173 370 IPR002022 -
Vivi6g00187 448 Pfam Pectate lyase, N terminus 23 80 IPR007524 GO:0030570
Vivi6g00187 448 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Vivi6g00187 448 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
Vivi6g00187 448 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Vivi6g00187 448 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Vivi6g00187 448 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Vivi6g00187 448 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Vivi6g00187 448 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Vivi6g00187 448 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Vivi6g00187 448 PANTHER PECTATE LYASE 18-RELATED 39 446 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00187 Vivi-Chr6 4773556 4775675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00187 3 448 Polysaccharide Lyase AT5G15110 54.390 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00187 K01728 - gmx:100780236 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g00187 6 4773556 4775675 Vivi6g00187 6 4773556 4775675 ECH
Vivi2g01856 2 86002192 86004698 Vivi6g00187 6 4773556 4775675 ECH