Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00183 ATGGGGTTTAGGAATAATGCAATTCAAGCAGGTAGTTTGGATGTAGGGAAGAAGTCAAAGGGAAAGATGAAGAAGGATGGTGGTGATGATGAGAAGGAAATTGGGTGTTGTGTTAAATTTAATTGCTTTGGAAAGTGTATACCTTCAAAATCAAAAGTTGATTCTTCCAAAAGTGGCACCACAAGTGCTTATAGTGGGGATAAAACATCTGCATATGAGAGAAGCAAAGGGGAAAGGAGTGCTCCTCCGGGATCGTCGACAACTAGTAATGCAGAAAGTATCCCTTCTACTCCGAAGTTTAGTGAGGAGTTGAAGTTTTCTTCTGATTTGAGAAAATTCACATTCATTGAGCTAAAGATGGCAACGAGGAATTTTCGACCCGAGAGTCTTCTTGGTGAGGGGGGATTTGGTTGTGTCTTCAAAGGTTGGATTGAAGAGAACGGAACTGCACCTGTGAAACCAGGTACTGGACTTACCGTCGCGGTCAAGACCCTCAACCATGATGGACTTCAGGGTCACAAAGAGTGGCTTGCTGAGTTAAACATTCTTGGTGATATTGTTCACCCAAATCTTGTTAAATTGATTGGTTTTTGTATCGAAGATGATCAAAGATTATTGGTTTATCAATTTATGCCCCGAGGAAGTTTGGAGAACCACCTCTTCAGAAAAGGGTCCTTGCCTCTTCCGTGGGCGATTAGAATGAAAATTGCACTCGGTGCAGCAAAAGGACTTCATTTTCTCCATGAAGGAGCTCAAAGGCCTATAATCTATCGCGATTTCAAGACATCTAATATTCTATTAGATGCGGAATATAATGCAAAGCTCTCTGATTTTGGACTCGCCAAAGACGGTCCCCAAGGTGAAAATACACATATATCAACAAGAGTTATGGGAACATATGGTTACGCCGCTCCGGAGTATGTAATGACCGGTCATTTGACATCAAAAAGCGACGTCTATAGTTTTGGCGTAGTGCTACTTGAAATGCTCACCGGCCGACGAGCTGTTGATAAGAATAGACCGAACGGGGAACACAACCTTGTCGAATGGGCGAGACCTGTACTAGGAGAACGAAGATTATTATTCCAGATAATTGATCCTCGTCTCGAAGGTCACTTCTCAATCAAAGGAGCACAGAAAGCCGCCCAACTAGCCGCCCAATGCCTTAGCCGTGACCCAAAACTCCGACCTATGATGAGTGAAGTTGTTCATGCTCTAAAGCCTCTTCAAAATCTCAAAGACATGGCTATCACGTCGTATCACTTTCAAGTCGTGCGAGTAGATCGTACAATGTCGATGCCAAAAAACGGTACGCAAACACAGTTAACATCTTCATCGAAGAAGGGTCATCAACCTATGAGGATATTGTCGAGTCCAAACGGTCAAAACGGTTCTCCGTATCGTCATTATATCAAGTCGCCTAAACCTAATGGATAG 1437 0.4315 MGFRNNAIQAGSLDVGKKSKGKMKKDGGDDEKEIGCCVKFNCFGKCIPSKSKVDSSKSGTTSAYSGDKTSAYERSKGERSAPPGSSTTSNAESIPSTPKFSEELKFSSDLRKFTFIELKMATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAELNILGDIVHPNLVKLIGFCIEDDQRLLVYQFMPRGSLENHLFRKGSLPLPWAIRMKIALGAAKGLHFLHEGAQRPIIYRDFKTSNILLDAEYNAKLSDFGLAKDGPQGENTHISTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRAVDKNRPNGEHNLVEWARPVLGERRLLFQIIDPRLEGHFSIKGAQKAAQLAAQCLSRDPKLRPMMSEVVHALKPLQNLKDMAITSYHFQVVRVDRTMSMPKNGTQTQLTSSSKKGHQPMRILSSPNGQNGSPYRHYIKSPKPNG 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00183 478 Gene3D Phosphorylase Kinase; domain 1 105 210 - -
Vivi6g00183 478 MobiDBLite consensus disorder prediction 51 69 - -
Vivi6g00183 478 MobiDBLite consensus disorder prediction 432 467 - -
Vivi6g00183 478 CDD STKc_IRAK 131 409 - -
Vivi6g00183 478 Pfam Protein kinase domain 128 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00183 478 SUPERFAMILY Protein kinase-like (PK-like) 99 406 IPR011009 -
Vivi6g00183 478 MobiDBLite consensus disorder prediction 80 98 - -
Vivi6g00183 478 Gene3D Transferase(Phosphotransferase) domain 1 211 428 - -
Vivi6g00183 478 MobiDBLite consensus disorder prediction 431 478 - -
Vivi6g00183 478 PANTHER OS01G0588500 PROTEIN-RELATED 79 410 - -
Vivi6g00183 478 ProSitePatterns Protein kinases ATP-binding region signature. 131 163 IPR017441 GO:0005524
Vivi6g00183 478 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Vivi6g00183 478 ProSiteProfiles Protein kinase domain profile. 125 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00183 478 FunFam Probable serine/threonine-protein kinase PBL8 211 425 - -
Vivi6g00183 478 FunFam Serine/threonine-protein kinase BIK1 92 210 - -
Vivi6g00183 478 MobiDBLite consensus disorder prediction 1 30 - -
Vivi6g00183 478 MobiDBLite consensus disorder prediction 49 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00183 Vivi-Chr6 4694289 4697939 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00183 90 422 Glycoside Hydrolase AT3G07070 51.304 4.93e-115 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi6g00183 Pkinase 4.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00183 - - gmx:100802866 801.586