Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00182 ATGGGGTTTAGGAATAATGCAATTCAAGCAGGTAGTTTGGATGTAGGGAAGAAGTCAAAGGGAAAGATGAAGAAGGATGGTGGTGATGATGAGAAGGAAATTGGGTGTTGTGTTAAATTTAATTGCTTTGGAAAGTGTATACCTTCAAAATCAAAAGTTGATTCTTCCAAAAGTGGCACCACAAGTGCTTATAGTGGGGATAAAACATCTGCATATGAGAGAAGCAAAGGGGAAAGGAGTGCTCCTCCGGGATCGTCGACAACTAGTAATGCAGAAAGTATCCCTTCTACTCCGAAGTTTAGTGAGGAGTTGAAGTTTTCTTCTGATTTGAGAAAATTCACATTCATTGAGCTAAAGATGGCAACGAGGAATTTTCGACCCGAGAGTCTTCTTGGTGAGGGGGGATTTGGTTGTGTCTTCAAAGGTTGGATTGAAGAGAACGGAACTGCACCTGTGAAACCAGGTACTGGACTTACCGTCGCGGTCAAGACCCTCAACCATGATGGACTTCAGGGTCACAAAGAGTGGCTTGCTGAGTTAAACATTCTTGGTGATATTGTTCACCCAAATCTTGTTAAATTGATTGGTTTTTGTATCGAAGATGATCAAAGATTATTGGTTTATCAATTTATGCCCCGAGGAAGTTTGGAGAACCACCTCTTCAGAAGGTCCTTGCCTCTTCCGTGGGCGATTAGAATGAAAATTGCACTCGGTGCAGCAAAAGGACTTCATTTTCTCCATGAAGGAGCTCAAAGGCCTATAATCTATCGCGATTTCAAGACATCTAATATTCTATTAGATGCGGAATATAATGCAAAGCTCTCTGATTTTGGACTCGCCAAAGACGGTCCCCAAGGTGAAAATACACATATATCAACAAGAGTTATGGGAACATATGGTTACGCCGCTCCGGAGTATGTAATGACCGGTCATTTGACATCAAAAAGCGACGTCTATAGTTTTGGCGTAGTGCTACTTGAAATGCTCACCGGCCGACGAGCTGTTGATAAGAATAGACCGAACGGGGAACACAACCTTGTCGAATGGGCGAGACCTGTACTAGGAGAACGAAGATTATTATTCCAGATAATTGATCCTCGTCTCGAAGGTCACTTCTCAATCAAAGGAGCACAGAAAGCCGCCCAACTAGCCGCCCAATGCCTTAGCCGTGACCCAAAACTCCGACCTATGATGAGTGAAGTTGTTCATGCTCTAAAGCCTCTTCAAAATCTCAAAGACATGGCTATCACGTCGTATCACTTTCAAGTCGTGCGAGTAGATCGTACAATGTCGATGCCAAAAAACGGTACGCAAACACAGTTAACATCTTCATCGAAGAAGGGTCATCAACCTATGAGGATATTGTCGAGTCCAAACGGTCAAAACGGTTCTCCGTATCGTCATTATATCAAGTCGCCTAAACCTAATGGATAG 1434 0.4317 MGFRNNAIQAGSLDVGKKSKGKMKKDGGDDEKEIGCCVKFNCFGKCIPSKSKVDSSKSGTTSAYSGDKTSAYERSKGERSAPPGSSTTSNAESIPSTPKFSEELKFSSDLRKFTFIELKMATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAELNILGDIVHPNLVKLIGFCIEDDQRLLVYQFMPRGSLENHLFRRSLPLPWAIRMKIALGAAKGLHFLHEGAQRPIIYRDFKTSNILLDAEYNAKLSDFGLAKDGPQGENTHISTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRAVDKNRPNGEHNLVEWARPVLGERRLLFQIIDPRLEGHFSIKGAQKAAQLAAQCLSRDPKLRPMMSEVVHALKPLQNLKDMAITSYHFQVVRVDRTMSMPKNGTQTQLTSSSKKGHQPMRILSSPNGQNGSPYRHYIKSPKPNG 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00182 477 MobiDBLite consensus disorder prediction 430 477 - -
Vivi6g00182 477 MobiDBLite consensus disorder prediction 51 69 - -
Vivi6g00182 477 SUPERFAMILY Protein kinase-like (PK-like) 110 437 IPR011009 -
Vivi6g00182 477 CDD STKc_IRAK 131 408 - -
Vivi6g00182 477 MobiDBLite consensus disorder prediction 80 98 - -
Vivi6g00182 477 Gene3D Phosphorylase Kinase; domain 1 105 210 - -
Vivi6g00182 477 Gene3D Transferase(Phosphotransferase) domain 1 211 427 - -
Vivi6g00182 477 Pfam Protein kinase domain 128 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00182 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Vivi6g00182 477 ProSitePatterns Protein kinases ATP-binding region signature. 131 163 IPR017441 GO:0005524
Vivi6g00182 477 PANTHER OS01G0588500 PROTEIN-RELATED 79 409 - -
Vivi6g00182 477 FunFam Probable serine/threonine-protein kinase PBL8 211 424 - -
Vivi6g00182 477 MobiDBLite consensus disorder prediction 431 466 - -
Vivi6g00182 477 FunFam Serine/threonine-protein kinase BIK1 92 210 - -
Vivi6g00182 477 ProSiteProfiles Protein kinase domain profile. 125 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00182 477 MobiDBLite consensus disorder prediction 1 30 - -
Vivi6g00182 477 MobiDBLite consensus disorder prediction 49 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00182 Vivi-Chr6 4694288 4697939 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00182 90 421 Glycoside Hydrolase AT3G07070 51.304 3.93e-115 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi6g00182 Pkinase 6.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00182 - - gmx:100802866 793.497