Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00173 ATGAACAAACTATGGGCACAATTTGGCTCTATACTAGCCACCATCATGTTTATGTATGCCATAATTGAACGTTTTCTACCACCTGCATTTCGAGACACTCTTCAAATCACCACACAAAAAGTACTAAACCTTCTATACCCTTACATCCAAATCACATTCCATGAATTCTCAGGTGAAAGACTCAAAAGAAGTGAAGCCTACACTTTCATCCAAACCTACCTTAGCGAAAACTCTTCCCAACTAGCCAAAAGACTCAAAGCAGAAGTCATGAAAGACAGTCAAAATCCATTAGTTCTTAGCATAGATGATGATGAAGAAGTCACAGATGAGTTTCGAGGCGTTAAACTCTGGTGGGCCGCGATCAAAATCGAAACTTCATCGCATGGTTTTTCGTCCTTCGCGAATTATAAAAGATACTACAAACTCACTTTCCATAAAAAGCATAGAGATTTAGTAACGGTTTTGTACATCAAACATGTTTTGAGAGAAGGGAAAGAGATTTCAATGAGAAACAGGCAGAGAAAGCTTTACACAAACAACCCTAGTAGCGGTTGGTATGGCTACAAACAATCGAAATGGAGCCACATTGTTTTCGAACACCCTGCCACATTCGAAACTCTTGCAATGGAGAAGAGGAAAAAAGAAGAAGTTATTAAAGATCTTTTGAAGTTTCGAAATGGTAAGGACTATTATGCGAAAATCGGTAAGGCTTGGAAACGCGGTTACTTGCTCTATGGTCCTCCGGGGACAGGTAAATCTACTATGATAGCCGCTATGGCGAATTTCATGAACTATGATGTTTATGATCTTGAGTTAACCGCGGTTAAGGATAATACTGAGTTAAGAAAGTTGTTGATCGAGACTTCTAGTAAAGCGATTATAGTTGTTGAAGATATCGATTGTTCGCTAGATTTTACTAGCCAAAGGAAGACTAATAAGGATAAAAATGTGGAGGAAGAATTCATAGATCAAAAAGATTATTATTATCATGGTAAAAAAGATATTGAAGAAGAGAATAATAGTACTAGTAGTAGAAATAGTAAGGTAACTTTATCGGGTTTGTTGAATTTTATCGATGGAATTTGGTCGGCGTGTGGAGGGGAGAGGATTATAATTTTTACGACGAATTTTGTGGAGAAACTTGATCCTGCTCTAATTAGGAGAGGAAGAATGGACAAACATGTTGAGATGTGTTATTGTTGTTTTGAGGCATTTAAGGTTCTTGTTAAGAATTATTTAGATATTGAGTCACATGTTTTGTTTGATGAGATTGGTGATTTGTTGGAAGTGGTTGATATGACACCTGCTGATGTTGCTGAGAATTTGATGCCTAAGTCTTTGAATGAAGATGTTGAGAGTAGTTTGAGGAATTTGATTGAAGCACTTGAGGAGAAGAAGAAGGTGGAAGGACATGTTGAAGATGAAGAGAAGGAAGATGGTGTTGGAGTTGTGGAAGATGTTAAGGGAAATGGTTTTGTTGTGAGTGGAAAATGA 1494 0.3742 MNKLWAQFGSILATIMFMYAIIERFLPPAFRDTLQITTQKVLNLLYPYIQITFHEFSGERLKRSEAYTFIQTYLSENSSQLAKRLKAEVMKDSQNPLVLSIDDDEEVTDEFRGVKLWWAAIKIETSSHGFSSFANYKRYYKLTFHKKHRDLVTVLYIKHVLREGKEISMRNRQRKLYTNNPSSGWYGYKQSKWSHIVFEHPATFETLAMEKRKKEEVIKDLLKFRNGKDYYAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFMNYDVYDLELTAVKDNTELRKLLIETSSKAIIVVEDIDCSLDFTSQRKTNKDKNVEEEFIDQKDYYYHGKKDIEEENNSTSSRNSKVTLSGLLNFIDGIWSACGGERIIIFTTNFVEKLDPALIRRGRMDKHVEMCYCCFEAFKVLVKNYLDIESHVLFDEIGDLLEVVDMTPADVAENLMPKSLNEDVESSLRNLIEALEEKKKVEGHVEDEEKEDGVGVVEDVKGNGFVVSGK 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00173 497 Pfam Domain associated at C-terminal with AAA 26 120 IPR025753 -
Vivi6g00173 497 CDD RecA-like_BCS1 217 397 - -
Vivi6g00173 497 FunFam AAA-ATPase ASD, mitochondrial 194 395 - -
Vivi6g00173 497 PANTHER BCS1 AAA-TYPE ATPASE 8 467 - -
Vivi6g00173 497 SMART AAA_5 238 401 IPR003593 GO:0016887
Vivi6g00173 497 Pfam ATPase family associated with various cellular activities (AAA) 243 397 IPR003959 GO:0005524|GO:0016887
Vivi6g00173 497 Gene3D - 396 463 - -
Vivi6g00173 497 Gene3D - 192 395 IPR027417 -
Vivi6g00173 497 Coils Coil 448 478 - -
Vivi6g00173 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 447 IPR027417 -
Vivi6g00173 497 ProSitePatterns AAA-protein family signature. 369 388 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00173 Vivi-Chr6 4614277 4615845 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00173 213 397 Calmodulin-binding Proteins AT3G56690 25.946 1.83e-09 58.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g00173 6 4614277 4615845 Vivi6g00173 6 4614277 4615845 ECH
Vivi2g04638 2 163080709 163082567 Vivi6g00173 6 4614277 4615845 PCT
Vivi6g00173 6 4614277 4615845 Vivi2g04640 2 163123205 163125233 PCT