Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00167 ATGCTCTCCAATAGCAAAATGAGAACTTGTATAATCTTTCTCATCTTTTTTACTAGCCAAATGTTGGTAACAATGGCTTTTGTTTTGAGTTCAAACTTTGATAAGCTTGCTTTGCTTGCATTGAAAGAAAAGCTTACAAATGGTGTACTTGACTCTCTTCCATCATGGAATGAGTCTCTACATTTTTGTGAATGGCAAGGTATTACATGTGGCCGTCGCCACATGAGAGTTAGAGTCTTGAATTTGGAGGATCAAAATTTAGGTGGTACTCTTGGACCATCTTTGGGAAATCTAACATTTCTAAGAAATCTCACCCTTTCAAATACCAACTTGCATGGGACAATTCCAAAACAAATTGGTCGTTTGAAGCGGTTGCAAATTCTCAACTTAGGGATCAACAATCTTCATGGAGAGATTCCTAAAGAGATCGTGAATTGTACAAATATTAAGGGTTTAGCTCTTGAGTTAAACAATTTGTCTGGTAATCTTCCATCAAATATGTTTCTTGCTTTTCCAAATCTCGGAAAAATTTTGTTAGGAGTGAATCAAATATCTGGTAATTTTCCGTCTTCAATATCCAACCTTACCAAACTTCAAAGGTTAGATATATCATTTAATGCTTTTAATGGTCCAATACCTCTAACTTTAGGTCAATTAAGTAAGCTTGAGTGGTTTGGTATATCAAACAATAGTTTTGGGAGTGGGGGAGCTCGTGATTTAGACTTTCTTTCTTCGTTAACCAACTGCACTCAATTGTCACATCTCATTTTTTTCAAAAATAATTTTGGCGGTGAGCTTCCTGATCTTATAGGAAACTTTTCATCCAATCTCAGTATTTTTCATATGGATGAAAATCAAATAAGTGGAGTGATACCCGAAAGAATTGGACAACTAACTGGTTTAACATTCTTAAACATTGGAAGCAATTTTCTTAAGGGAACAATTCCAAATTCAATAGGAAAGCTTGAAAATCTAGTAAGATTCGTCTTGCAACAAAACGAATTACATGGTGACATTCCTACTAGTATTGGAAATCTTACTATGTTGATTGATTTATATCTAGATATTAATAAATTAGAAGGAAACATTCCATTTTCTCTAAGACATTGCACCAAACTGAAGAATATAGTGATTTATGATAACAAATTGAGTGGCGATATACCCAACAATACATTCATCTATATGGAAGGTTTAATAAACCTTTATTTAGAAGAAAACTTTTTGACCGGTCCTATTCCTTCAGAATTTGGCAGCTTGAAACATCTTTCAGGCCTATTTCTAAACTCAAATAAACTTTTGGGCGAACTTCCTAAAGATCTTGGCGATTGTTCAACATTAACAATCCTTTCATTGGGGGGAAACTTTTTCCAAGGAGATATACCTTCATTCTTAGGAAAGTTAACGTCCCTTGAATTCCTAAGCATTTCTAACAACAATTTCTCAAACAAAATCCCCATTGAACTAGAAAAGCTAACTCATTTGAATACTTTGGACTTGTCTTTTAACAATCTCGACGGTGAGGTTCCCACAGGAGGTATCTTTAGCAATTTCACATCAATTTCAATAAATGGAAACAAGAACCTTTGTGGAGGGATACCTCAACTGAAGCTTCCCGCTTGTTTGCCCCTCAAGAAACACAAAAGATCTCTCAAAAGGAAAATTATTGTCATAAGTGTCATTGGCGGGGTTTTGATATCGTTCATAGCTTTTGTAATTGTTCATTTTCTCACGAGAAATCCCAAAAGGTTACCTTTACATTCTCTTCAAAATGGGAATTTGAGAGTTACTTACGGAGAGCTACATGAAGCAACCAATGGATTTTCTTCATCAAATTTGGTAGGATCGGGAAGCTTTGGTTCGGTTTACAAAGGATCTCTTGTTTACTTTGAAAGACTTATTGCTGTAAAGGTATTGAATCTTGAAGCACGCGGAGCAGCAAAGAGTTTCACGTCCGAATGTAAAGCTCTAGGAAGGATGAAACATCGAAACCTTGTCAAGATCCTAACTTGTTGCTCAAGTGTTGATTATAATGGTGAAGATTTCAAAGCTATTGTTTTCGAGTTCATGCCTAATGGAAGTCTAGAAATGATGTTGCACAATAATGAAGGGCATGTTAATGATAACCTAAGCCTGGAAAAAAGGATGGACATTGCTCTTGATGTAGCTCATGCATTGGATTATCTTCACAATGATACAGATCAAGTTATAGTTCACTGTGATATTAAGCCGAGCAATGTTCTTCTCGACGAAGATATTGTAGCCCATTTGGGAGACTTTGGCTTATCTAGGATCATTCATGGCGCCACATGGAATCCAAGTAAAGATGAAGCTATTTCTTCTTCCACAATTAAGGGGACTATTGGATATGTTCCTCCTGAGTATGGAGCAAGTGGTTCAGTATCACCATATGGAGATCTTTACAGTTATGGAATTCTTCTATTAGAGATGCTCACTGGAAAAAGGCCAACAGATAACATGTTTTCTGAAGGTCTAAGTTTACATGACTTTTGTAAGTCCAAAATTCCAGAAGGTATCTTAGAGATAGTGGATTCACGTTTACTTATGCCATTTGCTGAAGATCAAACAGGAATTGTTGAAAACAAGATTAGAACATGTTTGGTGTTGTTTGCTAGCATTGGAGTAGCATGTTCAGAAGAGTTTCCTACTCATCGAATGAGGATAAAAGATGTTATAGTTAAGTTGAATGAAATCAAACCAAAGTTTCCATGCTAG 2733 0.3582 MLSNSKMRTCIIFLIFFTSQMLVTMAFVLSSNFDKLALLALKEKLTNGVLDSLPSWNESLHFCEWQGITCGRRHMRVRVLNLEDQNLGGTLGPSLGNLTFLRNLTLSNTNLHGTIPKQIGRLKRLQILNLGINNLHGEIPKEIVNCTNIKGLALELNNLSGNLPSNMFLAFPNLGKILLGVNQISGNFPSSISNLTKLQRLDISFNAFNGPIPLTLGQLSKLEWFGISNNSFGSGGARDLDFLSSLTNCTQLSHLIFFKNNFGGELPDLIGNFSSNLSIFHMDENQISGVIPERIGQLTGLTFLNIGSNFLKGTIPNSIGKLENLVRFVLQQNELHGDIPTSIGNLTMLIDLYLDINKLEGNIPFSLRHCTKLKNIVIYDNKLSGDIPNNTFIYMEGLINLYLEENFLTGPIPSEFGSLKHLSGLFLNSNKLLGELPKDLGDCSTLTILSLGGNFFQGDIPSFLGKLTSLEFLSISNNNFSNKIPIELEKLTHLNTLDLSFNNLDGEVPTGGIFSNFTSISINGNKNLCGGIPQLKLPACLPLKKHKRSLKRKIIVISVIGGVLISFIAFVIVHFLTRNPKRLPLHSLQNGNLRVTYGELHEATNGFSSSNLVGSGSFGSVYKGSLVYFERLIAVKVLNLEARGAAKSFTSECKALGRMKHRNLVKILTCCSSVDYNGEDFKAIVFEFMPNGSLEMMLHNNEGHVNDNLSLEKRMDIALDVAHALDYLHNDTDQVIVHCDIKPSNVLLDEDIVAHLGDFGLSRIIHGATWNPSKDEAISSSTIKGTIGYVPPEYGASGSVSPYGDLYSYGILLLEMLTGKRPTDNMFSEGLSLHDFCKSKIPEGILEIVDSRLLMPFAEDQTGIVENKIRTCLVLFASIGVACSEEFPTHRMRIKDVIVKLNEIKPKFPC 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00167 910 FunFam LRR receptor-like serine/threonine-protein kinase EFR 579 688 - -
Vivi6g00167 910 SUPERFAMILY L domain-like 275 530 - -
Vivi6g00167 910 SUPERFAMILY Protein kinase-like (PK-like) 583 899 IPR011009 -
Vivi6g00167 910 SMART serkin_6 607 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00167 910 Gene3D Transferase(Phosphotransferase) domain 1 689 908 - -
Vivi6g00167 910 FunFam Lrr receptor-like serinethreonine-protein kinase gso2 170 249 - -
Vivi6g00167 910 ProSitePatterns Protein kinases ATP-binding region signature. 613 636 IPR017441 GO:0005524
Vivi6g00167 910 Pfam Protein kinase domain 609 834 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00167 910 SMART LRR_typ_2 419 443 IPR003591 -
Vivi6g00167 910 SMART LRR_typ_2 298 322 IPR003591 -
Vivi6g00167 910 SMART LRR_typ_2 195 219 IPR003591 -
Vivi6g00167 910 SMART LRR_typ_2 122 146 IPR003591 -
Vivi6g00167 910 SMART LRR_typ_2 491 516 IPR003591 -
Vivi6g00167 910 SMART LRR_typ_2 467 490 IPR003591 -
Vivi6g00167 910 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 689 909 - -
Vivi6g00167 910 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Vivi6g00167 910 ProSiteProfiles Protein kinase domain profile. 607 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00167 910 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 250 542 - -
Vivi6g00167 910 SUPERFAMILY L domain-like 34 292 - -
Vivi6g00167 910 PANTHER OS04G0122200 PROTEIN 38 905 - -
Vivi6g00167 910 ProSitePatterns Serine/Threonine protein kinases active-site signature. 736 748 IPR008271 GO:0004672|GO:0006468
Vivi6g00167 910 Gene3D Ribonuclease Inhibitor 238 548 IPR032675 -
Vivi6g00167 910 Gene3D Ribonuclease Inhibitor 30 237 IPR032675 -
Vivi6g00167 910 FunFam Nuclear pore complex protein NUP107 31 169 - -
Vivi6g00167 910 Gene3D Phosphorylase Kinase; domain 1 572 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00167 Vivi-Chr6 4351822 4355363 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00167 80 908 Receptor kinase-like Gene Family AT3G47570 43.802 0.0 631
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vivi6g00167 Pkinase 6.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00167 - - mtr:25482466 1090.87