Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00166 ATGAACTTAAGAAAATCTTTAGTTAAAAATTTCTGTGCTCCAAAAATGTGGATGGTCTTTCTTCTTATTTGGGGTTACATCATGGGGACTCGATCTGCTACACTAACATCTCAAATTCAAATGGAAGCAAATGCTATTTTGGAAAGTGGATGGTGGAACACTTCTAGTGCACACATGAACATCTCTAATCGATGCAATTGGGGTAGCATATTTTGCAACAAAGTTGGAAGCATAAAAGAAATCAATATAGATTTTGTACCAACATCGGATATTTACTTTGCAACCCTAAATATGTCGGTTTTCCACAATTTAGAAAGCCTTGTTTTGAGGTCAATTGGACTACGAGGAAATATTCCAAAAGAAATAGGTATTCTCTCGAAACTCACTCGTCTTGATCTGTCTGACAACTATCTTGTAGGTGAGATACCTTATTCTTTAAGCAAACTTGTAACATTAACACACTTGGATATCTCTTCCAACATCCTTCAAAGTTTCATTCCACATGAGTTGGGAATCATTCAAAATCTCACTACATTAAATCTATCTTACAATAGAATCAATGGTCAAATTCCCCATTCACTAAAAAATCTAACCAAACTCATTCATCTAGATCTCTCTCACAATTCTCTTGTAGGTGAGTTACCTTCTTCAATAGGAAATCTTAAACAATTAGAGAAGTTATATATTTCTAACAACAATTTGGAAGGTTCAATACCTTATGAGTTGAGATTCATTCAAAATCTTGTTGCATTAAATCTATCTCATAACTTCTTTCATGGGAGTTTTCCTATTTCTATCATAGGAAGTGGACTAACTCATCTTGATTTGTCGGGAAACTCTCTTATAGGTGATTTACCTCCTTCAATTGAAAATCTTAGACAATTAAAGTACTTAGACATCTCTTTTAACAAAATTGATGGTTCCATTCCTCTTGAGTGGTGGTTTCTAAAAAATCTCACAACATTAAATCTATCTAATAATAGAATCAAAGGTGAGATACTTCCTTCCATAGAGAATCTTAGGCAATTACAATATTTAGACATTTCTAACAACTACATTCAAGGTTCAATTCCTTTTGAGCTGAGTTTCTTGAAAAATCTCACAAAATTAGATATATCTCACAATAGATTCAATAGTAATTTTCTCATTTTCGTTACGAATCTCACACGCTTAGTATACCTTGACATCTCGTATAATTTTCTCACTGGTTTCCTCCCATCCAACTTCGATCAAATGACTAAATTACAAGTGTTGTTGTTAAATAACAATTTCTTTGGTGGAATATTTCCAATCTCGCTAACAAATCTCTCTCAATTAGAAATCCTTGACATATCCCACAATTTCCTTCTTGGTCCCCTTCCTTCCAATTTCTTTGCTTTGACACATTACAAAACCTCCATCGACCTTAGTCACAACCTCATTAGCGGCGAAATCCCTTTTCAAATAGGACATTTTCAACAACTTGTTTTAAGGAATAATAATCTCAAAGGAAAAATTCCTCAATCCATTTGTAATGTTGCTAGTGTAAATATTTCCTACAATTATTTGAATGGTCCCATTCCATTTTGTGTTGATCCTTATGCAATAATAGGTAACAAGGATGTATGTACTAACTTTTTATACAAGAAAGTCCACTTCAAATTCCACCCTTGTCCACCTCCCAAGAAAAGTAATAATAAAGTAAGAAGACATATTGTTATTGCTCTTCCTACCCTTATTATTCTACTCCTAGCCTTCTCACTTATCATTTGCTTCAAACTTGGACATGATTCTACTAAGAATAAGTCAGAAAATGCAAAGACAACAAAAAATGGAGATTTGTTTTGTATATGGAATTATGATGGAAAAATAGCATATGATGATATTATTAAAGCAACAGAAGACTTTGACATGAAATATTGCATTGGAAAAGGAACATATGGAAGTGTTTACAAAGCACAATTACAAAGTGGAAAATTTGTGGCTATAAAGAAACTCCAAGGTTATGAAGACGAGGTGCCAACTTCTGATGAGAGTTTTAGAAATGAAGTGGAAGTATTATTAGAAATAAAGCATCGACATATTGTAAAGCTTCATGGATTTTGCTTGCACAAAAGAATCATGTTTTTGATCTACCAGTACATGGAAAATGGAAGCTTGTCATCTATCTTATACGATGACGTGAAAGGCAAGGAATTCGATTGGAAAAAGAGGGTTAGCGTTGTTAAAGGAATTGCATTTGGTCTCTCATATCTCCATCATGAATGTCCAAATCCAATAGTGCACAGAGATGTTTCTACTAAAAATATCTTGCTAAACTCCGAGTGGCAGCCTAGTGTTTCTGATTTTGGAACAGCTCGATTCCTTCAACACGATTCATCCAATCAAACAACAGTTTCTGGAACTATTGGATATATAGCCCCCGAACTTGCCTATACTACAATTGTGAGTGAAAAATGTGATGTGTATAGTTTTGGAGTAGTAGCACTTGAAACTTTAGTAGGAAGACACCCTGAAGGTATATTGTCATCACTTCAATTGGCATCAACTCAAAACATGAAGTTGTGTGATGTATTAGACAAACGTCTCTTACTTCCAAATAATTCCATAGTTTTACTTGACATAATTCATGTTGCTGTGGTAGCATTTGCCTGCTTAAATCTCAATCCTTGCTATCGACCAACAATGAAATGTGTCTCACAATGTTTTGTTACTAAGCTCACACCATTAAAAATTCCTCTGAGAGAAATTTCATTAGAGAAACTCATGAATCAAGATCTCAAAGCATTATTTCATATTGAGAACCCTTGA 2790 0.3394 MNLRKSLVKNFCAPKMWMVFLLIWGYIMGTRSATLTSQIQMEANAILESGWWNTSSAHMNISNRCNWGSIFCNKVGSIKEINIDFVPTSDIYFATLNMSVFHNLESLVLRSIGLRGNIPKEIGILSKLTRLDLSDNYLVGEIPYSLSKLVTLTHLDISSNILQSFIPHELGIIQNLTTLNLSYNRINGQIPHSLKNLTKLIHLDLSHNSLVGELPSSIGNLKQLEKLYISNNNLEGSIPYELRFIQNLVALNLSHNFFHGSFPISIIGSGLTHLDLSGNSLIGDLPPSIENLRQLKYLDISFNKIDGSIPLEWWFLKNLTTLNLSNNRIKGEILPSIENLRQLQYLDISNNYIQGSIPFELSFLKNLTKLDISHNRFNSNFLIFVTNLTRLVYLDISYNFLTGFLPSNFDQMTKLQVLLLNNNFFGGIFPISLTNLSQLEILDISHNFLLGPLPSNFFALTHYKTSIDLSHNLISGEIPFQIGHFQQLVLRNNNLKGKIPQSICNVASVNISYNYLNGPIPFCVDPYAIIGNKDVCTNFLYKKVHFKFHPCPPPKKSNNKVRRHIVIALPTLIILLLAFSLIICFKLGHDSTKNKSENAKTTKNGDLFCIWNYDGKIAYDDIIKATEDFDMKYCIGKGTYGSVYKAQLQSGKFVAIKKLQGYEDEVPTSDESFRNEVEVLLEIKHRHIVKLHGFCLHKRIMFLIYQYMENGSLSSILYDDVKGKEFDWKKRVSVVKGIAFGLSYLHHECPNPIVHRDVSTKNILLNSEWQPSVSDFGTARFLQHDSSNQTTVSGTIGYIAPELAYTTIVSEKCDVYSFGVVALETLVGRHPEGILSSLQLASTQNMKLCDVLDKRLLLPNNSIVLLDIIHVAVVAFACLNLNPCYRPTMKCVSQCFVTKLTPLKIPLREISLEKLMNQDLKALFHIENP 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00166 929 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 196 265 - -
Vivi6g00166 929 ProSitePatterns Protein kinases ATP-binding region signature. 635 658 IPR017441 GO:0005524
Vivi6g00166 929 Pfam Protein kinase domain 634 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00166 929 Pfam Leucine rich repeat 270 329 IPR001611 GO:0005515
Vivi6g00166 929 Pfam Leucine rich repeat 175 234 IPR001611 GO:0005515
Vivi6g00166 929 SMART LRR_sd22_2 436 471 - -
Vivi6g00166 929 SMART LRR_sd22_2 388 411 - -
Vivi6g00166 929 SMART LRR_sd22_2 316 342 - -
Vivi6g00166 929 SMART LRR_sd22_2 125 148 - -
Vivi6g00166 929 SMART LRR_sd22_2 221 250 - -
Vivi6g00166 929 SMART LRR_sd22_2 173 199 - -
Vivi6g00166 929 SMART LRR_sd22_2 149 170 - -
Vivi6g00166 929 SMART LRR_sd22_2 364 381 - -
Vivi6g00166 929 SMART LRR_sd22_2 268 294 - -
Vivi6g00166 929 SMART LRR_typ_2 412 435 IPR003591 -
Vivi6g00166 929 SMART LRR_typ_2 316 343 IPR003591 -
Vivi6g00166 929 SMART LRR_typ_2 436 460 IPR003591 -
Vivi6g00166 929 SMART LRR_typ_2 388 411 IPR003591 -
Vivi6g00166 929 SMART LRR_typ_2 197 221 IPR003591 -
Vivi6g00166 929 SMART LRR_typ_2 173 196 IPR003591 -
Vivi6g00166 929 SMART LRR_typ_2 125 149 IPR003591 -
Vivi6g00166 929 PRINTS Leucine-rich repeat signature 200 213 - -
Vivi6g00166 929 PRINTS Leucine-rich repeat signature 316 329 - -
Vivi6g00166 929 SUPERFAMILY L domain-like 334 525 - -
Vivi6g00166 929 ProSiteProfiles Leucine-rich repeat profile. 342 365 IPR001611 GO:0005515
Vivi6g00166 929 SUPERFAMILY L domain-like 53 380 - -
Vivi6g00166 929 PANTHER LEUCINE RICH REPEAT KINASE 2 365 898 - -
Vivi6g00166 929 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 316 546 - -
Vivi6g00166 929 Gene3D Phosphorylase Kinase; domain 1 589 707 - -
Vivi6g00166 929 ProSitePatterns Tyrosine protein kinases specific active-site signature. 753 765 IPR008266 GO:0004672|GO:0006468
Vivi6g00166 929 FunFam Os07g0541700 protein 708 796 - -
Vivi6g00166 929 Pfam Leucine Rich Repeat 390 410 IPR001611 GO:0005515
Vivi6g00166 929 Pfam Leucine Rich Repeat 438 457 IPR001611 GO:0005515
Vivi6g00166 929 Pfam Leucine Rich Repeat 127 149 IPR001611 GO:0005515
Vivi6g00166 929 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 591 707 - -
Vivi6g00166 929 ProSiteProfiles Leucine-rich repeat profile. 318 341 IPR001611 GO:0005515
Vivi6g00166 929 ProSiteProfiles Leucine-rich repeat profile. 175 198 IPR001611 GO:0005515
Vivi6g00166 929 SUPERFAMILY Protein kinase-like (PK-like) 612 895 IPR011009 -
Vivi6g00166 929 Gene3D Transferase(Phosphotransferase) domain 1 708 902 - -
Vivi6g00166 929 FunFam Nuclear pore complex protein NUP107 31 192 - -
Vivi6g00166 929 Gene3D Ribonuclease Inhibitor 88 267 IPR032675 -
Vivi6g00166 929 Gene3D Ribonuclease Inhibitor 268 545 IPR032675 -
Vivi6g00166 929 ProSiteProfiles Protein kinase domain profile. 629 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00166 Vivi-Chr6 4312281 4315706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00166 103 801 Receptor kinase-like Gene Family AT4G08850 37.552 6.78e-139 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi6g00166 Pkinase 3.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00166 - - vvo:131608772 1829.68