Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi6g00151 | ATGGCATCTGAATCCTCTAACACCTCAGCCACTTCACAAGAGCAAAGTGATTCTTCTCACTCTAAAAAAAGGGTGAACATGAAGGAGATTGAACAAGATCAATCCTCAAACACAAATTCCAACAATCTTTTTAGTTTCGTCAAACTACTAGAAGACGATTCCATTCCAGAGTCGTCGAATGTGCAAGAACATGATTTTTTTAGTCCGACTCAAGTTGATTCAACATCTCGTTTTCCTACTAAGAACAACAACGAAGGGAGAGATGAAAACAAAAAGGAAGAGAAGAATTCGGATTCAAAGCTTTTTTCATGCTCTTTTTGTAAGAAGTTGTTTTCAACTTCACAAGCTTTAGGCGGACATCAGAATGCTCATAAGGCAGAGCGAACTTTAGAAAAAATGCGTAAAGAAAGGTACGACGACAATGCTTTACGTTTTGGACAACCTCGGGTTCACCCTTATTTTAGTTATCAAAATACTCTTTATAAACCTAATTATTATAACTCACTTGGGGTTAGAATTGATTCAACAATTCAAAAACCACCTTATTTTAACCCTAACCCTAACCCTAGGATTACTTCACATAGTTTTGGATATGCTAATGGTGCTTTGTGTTTACAAGAGAGATTAAACCCTTCTCTCATGTCATTGACAAACATGAGGAATGGTAATAGCATGGTTGGAAATCTAAGTATTGGTGGTGCAACTACTTTGAAGATTGAAGATGGTTCTCATAGTAAATTTGGACACTTTTCTTCAAATATTGCTACAAGTTCAAATTCAAATTCAACCAAGGTTGATATTCATCAATCAAAGTCCAACATTAAAGAAGAACCCTCCAATTCTGAATCTTGTGAACTTGATTTGACACTCAAACTTTAA | 879 | 0.3561 | MASESSNTSATSQEQSDSSHSKKRVNMKEIEQDQSSNTNSNNLFSFVKLLEDDSIPESSNVQEHDFFSPTQVDSTSRFPTKNNNEGRDENKKEEKNSDSKLFSCSFCKKLFSTSQALGGHQNAHKAERTLEKMRKERYDDNALRFGQPRVHPYFSYQNTLYKPNYYNSLGVRIDSTIQKPPYFNPNPNPRITSHSFGYANGALCLQERLNPSLMSLTNMRNGNSMVGNLSIGGATTLKIEDGSHSKFGHFSSNIATSSNSNSTKVDIHQSKSNIKEEPSNSESCELDLTLKL | 292 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi6g00151 | 292 | Gene3D | Classic Zinc Finger | 81 | 146 | - | - | |
| Vivi6g00151 | 292 | MobiDBLite | consensus disorder prediction | 257 | 280 | - | - | |
| Vivi6g00151 | 292 | Pfam | C2H2-type zinc finger | 102 | 126 | - | - | |
| Vivi6g00151 | 292 | PANTHER | C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN | 3 | 292 | IPR044246 | GO:0009788 | |
| Vivi6g00151 | 292 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
| Vivi6g00151 | 292 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 104 | 124 | IPR013087 | - | |
| Vivi6g00151 | 292 | MobiDBLite | consensus disorder prediction | 55 | 95 | - | - | |
| Vivi6g00151 | 292 | MobiDBLite | consensus disorder prediction | 60 | 81 | - | - | |
| Vivi6g00151 | 292 | SUPERFAMILY | beta-beta-alpha zinc fingers | 98 | 130 | IPR036236 | - | |
| Vivi6g00151 | 292 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
| Vivi6g00151 | 292 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 102 | 129 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi6g00151 | Vivi-Chr6 | 4113024 | 4113902 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi6g00151 | 97 | 201 | C2H2 Transcription Factor Family | AT5G01860 | 41.441 | 3.46e-14 | 68.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi6g00151 | - | - | tpra:123915384 | 356.295 |