Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00146 ATGAACTTCAAATATTCTTTAGTCTATAATTTCTATGGTCAAAAAATATGTATAGCCTTTCTTGTTATTTGGGGTTTGATCTTTGGGATTGAATCTGTCACACTAAAATCTCAACTTCAAAATGAAGCAAATGCAATACTCAAGTCTAGGTGGTGGAATACGTCTGACGCACAGTTTAACATCTCAAGACGTTGTTATTGGCCCGATATATCTTGCAAGAAGGATGGAAGCATATATGAATTCAGCGTTAAAAGTGCTAGAATTTATAATGTTAAATTTTCAGCACTCAACCTATCTGCTTTTGATAATTTAGAAATTCTTACTTTAAGTTCATTGAATCTTGAAGGGGCTGTTCTAAAAGAAATTGGTTTCCTCTCCAAACTCACTCATCTTGATTTGTCTTCTAATTATCTTGAAGGTAAGATACCATTTTCATTAGAAAATCTCACAAAACTCACTCATCTAAATTTGTCTTATAATGGGTTTGAACTTAAGATACCTCCTTCATTAAAAAATCTTACAAAACTCACTCATCTTGATTTGTCATCAAATATATTTAAAGGTGAGATAGTTCCTTCACTAGGCAACTTTGAACAATTAAAGTATTTGGACATCTCTCATAACAAATTTAACGGTTCCATTCCAAATGAGTTAGGGTTCCAAAACAATCTCACAAGATTAAATCTATCTTTCAATAGATTCAAAGTCGAGGTGCTTCCTTCACTAGAAAATCTCACAAAACTCATTCATCTTGATTTGTCTTCTAATTTACTTGAAGGTGAAATACCTCAATATTCACTAGGAAATCTCATACAACTACAAGAGTTAGACATCTCTAACAACATGATTCAAAGTTTCATTCCTTATGAGTTGGGGTTTTTAAAAAATCTCACAAGATTAGATCTATCTCACAATAGATTCAAAAGAGAGGTGTTTCCTTCAATAGTAAATCTCACAAAACTCACTTATCTTGCTTTGTCCTTTAATTCTCTTGAAGGTGAGTTACCACTTTTATTGGGAAACCTTAGAAAATTAAACTACTTAGACATATCCAACAACAAGATTCAAGGTTCCATTGTTTCACTAGAAAATCTCATACAACTTCAAATTTTAGACATTTCAAACAATTTTTTCAATGGTTCCCTCCCATCTAACTTGGGTCAATTAACCAAATTGCAAGTGTTACAATTAAATAAAAACTTTCTCGGTGGAACCCTTCCAGTTTCGGTAAGAAATCTTTCTCAATTAAAAATTCTTGATATTTCCGACAATTTACTCAGTGGCCCCATTTCTTCCATAATGTTCCCATTACCATATTACAAAACTTTCATAAACCTCAGTCACAATCTTATTAGTGGTGAAATTCCATCTTACATTGGAAATTTTCAACAACTTTATCTCAACAATAACAATTTAACTGGAAGAATTCCCCAATCTCTCTGTAGGGCCGGTTATATAGATATTTCCTACAATTGTATCAAGGATTTCGTTTCATTTTGTACTAACATTTATACAAGGAACAAGGATGAATGTATCGACATTTCTTTTAGCCAATTCCAACCCAGGTCACCTCATAAGAGTAAGAATAAAGAAATGCATTTTGTTGTCATAGGTATTTCAATTTTTATTGTTCTAACTCTAGCATTCTCAATCCTAATATGCTTGAAACTTTGTCATAATTCTATAAAGAACAATCATGGAATCACAATAACAACAAAAGATGGAGATATTTTTAGTATATGGAATTATGATGGAAAGATTGCATACGACGACGTTATAAAAGCAACAGAAAACTTTGACATAAGATATTGCATCGGAACTGGCGGATATGGAAGTGTTTATAAGGCACAATTACCATGTGGCAAAGTTGTTGCCTTAAAGAAACTTCACGGAAATGAAGCAGAGATTCCATCTTTTGATGAAAGTTTTAGAAACGAAGTGAAAATATTATCTGAAATTAAGCATCGACATATTGTGAAACTTTATGGTTTTTGCTTGCACAAAAGAATTATGTTTTTGATATATCAATACATGGAGAGAGGAAGCTTGTTCTCAATCTTGTATAATGATGTAGAAGCCATGGAATTCAATTGGAGAAAGAGGGTTAGCTTTGTTAAAGGAGTCGCATTTGGTTTGTCATATCTTCATCATGATTGTCTAGTCCCAATAGTGCATAGAGATATATCTAGTGGCAACATCTTGCTAAACAGTGTAGCTGACTTTGGCACAGCTAGACTTCTTCAATATGAATCATCCAATCGAACGATAGTTGCTGGAACTATCGGATATATCGCTCCAGAACTTGCCTATACTATGGTTGTGAATGAAAAGTGTGATGTATATAGTTTTGGTGTTGTTGCACTTGAAACTTTAGTGGGAAGACATCCCGGAGATATATTGGCATTACTTCAATCAACATCAATCCAAGATATCAAATTATGTGAAGTATTAGATCAGCGTCTCTCACTTCCAAACAATGACATAGTTTTACGTGACATAATTCGTGTCGCCGCAATTGCATTTGCATGCTTAAATCTAAATCCTTGTTTACGGCCAACAATGAAAAGTGTCTCACAAAGTTTTGTCATTGAACTTCCACCATTTAGCATTCCATTGACTGGAATTTCTTTGCAACAACTGATGATATTATTTGTAAATTAA 2661 0.3311 MNFKYSLVYNFYGQKICIAFLVIWGLIFGIESVTLKSQLQNEANAILKSRWWNTSDAQFNISRRCYWPDISCKKDGSIYEFSVKSARIYNVKFSALNLSAFDNLEILTLSSLNLEGAVLKEIGFLSKLTHLDLSSNYLEGKIPFSLENLTKLTHLNLSYNGFELKIPPSLKNLTKLTHLDLSSNIFKGEIVPSLGNFEQLKYLDISHNKFNGSIPNELGFQNNLTRLNLSFNRFKVEVLPSLENLTKLIHLDLSSNLLEGEIPQYSLGNLIQLQELDISNNMIQSFIPYELGFLKNLTRLDLSHNRFKREVFPSIVNLTKLTYLALSFNSLEGELPLLLGNLRKLNYLDISNNKIQGSIVSLENLIQLQILDISNNFFNGSLPSNLGQLTKLQVLQLNKNFLGGTLPVSVRNLSQLKILDISDNLLSGPISSIMFPLPYYKTFINLSHNLISGEIPSYIGNFQQLYLNNNNLTGRIPQSLCRAGYIDISYNCIKDFVSFCTNIYTRNKDECIDISFSQFQPRSPHKSKNKEMHFVVIGISIFIVLTLAFSILICLKLCHNSIKNNHGITITTKDGDIFSIWNYDGKIAYDDVIKATENFDIRYCIGTGGYGSVYKAQLPCGKVVALKKLHGNEAEIPSFDESFRNEVKILSEIKHRHIVKLYGFCLHKRIMFLIYQYMERGSLFSILYNDVEAMEFNWRKRVSFVKGVAFGLSYLHHDCLVPIVHRDISSGNILLNSVADFGTARLLQYESSNRTIVAGTIGYIAPELAYTMVVNEKCDVYSFGVVALETLVGRHPGDILALLQSTSIQDIKLCEVLDQRLSLPNNDIVLRDIIRVAAIAFACLNLNPCLRPTMKSVSQSFVIELPPFSIPLTGISLQQLMILFVN 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00146 886 FunFam Leucine-rich repeat receptor protein kinase MSP1 562 677 - -
Vivi6g00146 886 SUPERFAMILY Protein kinase-like (PK-like) 583 860 IPR011009 -
Vivi6g00146 886 Gene3D Ribonuclease Inhibitor 440 518 IPR032675 -
Vivi6g00146 886 ProSitePatterns Tyrosine protein kinases specific active-site signature. 723 735 IPR008266 GO:0004672|GO:0006468
Vivi6g00146 886 ProSitePatterns Protein kinases ATP-binding region signature. 605 627 IPR017441 GO:0005524
Vivi6g00146 886 Gene3D Transferase(Phosphotransferase) domain 1 678 864 - -
Vivi6g00146 886 PANTHER LEUCINE RICH REPEAT KINASE 2 266 862 - -
Vivi6g00146 886 FunFam Nuclear pore complex protein NUP107 32 192 - -
Vivi6g00146 886 Pfam Leucine Rich Repeat 199 218 IPR001611 GO:0005515
Vivi6g00146 886 Pfam Leucine Rich repeat 343 360 IPR001611 GO:0005515
Vivi6g00146 886 Gene3D Ribonuclease Inhibitor 288 361 IPR032675 -
Vivi6g00146 886 SUPERFAMILY L domain-like 262 493 - -
Vivi6g00146 886 SMART LRR_typ_2 459 483 IPR003591 -
Vivi6g00146 886 SMART LRR_typ_2 197 221 IPR003591 -
Vivi6g00146 886 SMART LRR_typ_2 270 293 IPR003591 -
Vivi6g00146 886 SMART LRR_typ_2 125 146 IPR003591 -
Vivi6g00146 886 SMART LRR_typ_2 294 314 IPR003591 -
Vivi6g00146 886 SMART LRR_typ_2 149 172 IPR003591 -
Vivi6g00146 886 SMART LRR_typ_2 245 269 IPR003591 -
Vivi6g00146 886 SMART LRR_typ_2 365 389 IPR003591 -
Vivi6g00146 886 SMART LRR_typ_2 318 342 IPR003591 -
Vivi6g00146 886 ProSiteProfiles Leucine-rich repeat profile. 127 150 IPR001611 GO:0005515
Vivi6g00146 886 ProSiteProfiles Protein kinase domain profile. 599 862 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00146 886 Pfam Leucine rich repeat 248 307 IPR001611 GO:0005515
Vivi6g00146 886 Pfam Leucine rich repeat 127 184 IPR001611 GO:0005515
Vivi6g00146 886 SUPERFAMILY L domain-like 55 331 - -
Vivi6g00146 886 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 264 498 - -
Vivi6g00146 886 Pfam Protein kinase domain 604 860 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00146 886 SMART LRR_sd22_2 173 199 - -
Vivi6g00146 886 SMART LRR_sd22_2 245 260 - -
Vivi6g00146 886 SMART LRR_sd22_2 294 320 - -
Vivi6g00146 886 SMART LRR_sd22_2 125 151 - -
Vivi6g00146 886 SMART LRR_sd22_2 342 367 - -
Vivi6g00146 886 SMART LRR_sd22_2 413 448 - -
Vivi6g00146 886 SMART LRR_sd22_2 270 291 - -
Vivi6g00146 886 Gene3D Ribonuclease Inhibitor 190 287 IPR032675 -
Vivi6g00146 886 Gene3D Ribonuclease Inhibitor 33 189 IPR032675 -
Vivi6g00146 886 Gene3D Ribonuclease Inhibitor 362 437 IPR032675 -
Vivi6g00146 886 Gene3D Phosphorylase Kinase; domain 1 565 677 - -
Vivi6g00146 886 ProSiteProfiles Leucine-rich repeat profile. 344 366 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00146 Vivi-Chr6 3801983 3805201 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00146 113 766 Receptor kinase-like Gene Family AT4G08850 36.712 5.94e-127 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi6g00146 Pkinase 5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00146 - - vvo:131608772 960.674