Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00144 ATGAACTTCAAAAATTCTTTAGTCTATAATTTCTATGGTCAAAAAATATGTATAGCCTTTCTTGTTATTTGGGGTTTGATCTTTGGGATCGAATCTGTCACACTAAAATCTCAACTTCAAAATGAAGCAAATGCAATACTCAAGTCTAGGTGGTGGAATACGTCTGACGCACAGTTTAACATCTCAAGACGTTGTTATTGGCCCGATATATCTTGCAAGAAGGATGGAAGCATATATGAATTCAGCGTTAAAAGTGCTAGAATTTATAATGTTAAATTTTCAGCACTCAACCTATCTGCTTTTGATAATTTAGAAATTCTTACTTTAAGTTCATTGAATCTTGAAGGGGCTGTTCTAAAAGAAATTGGTTTCCTCTCCAAACTCACTCATCTTGATTTGTCTTCTAATTATCTTGAAGGTAAGATACCATTTTCATTAGAAAATCTCACAAAACTCACTCATCTAAATTTGTCTTATAATGGGTTTGAACTTAAGATACCTCCTTCATTAAAAAATCTTACAAAACTCACTCATCTTGATTTGTCATCTAATATATTTAAAGGTGAGATAGTTCCTTCACTAGGCAACTTTGAACAATTAAAGTATTTGGACATCTCTCATAACAAATTTAACGGTTCCATTCCAAATGAGTTAGGGTTCCAAAACAATCTCACAAGATTAAATCTATCTTTCAATAGATTCAAAGTCGAGGTGCTTCCTTCACTAGAAAATCTCACAAAACTCATTCATCTTGATTTGTCTTCTAATTTACTTGAAGGTGAAATACCTCAATATTCACTAGGAAATCTCATACAACTACAAGAGTTAGACATCTCTAACAACATGATTCAAAGTTTCATTCCTTATGAGTTGGGGTTTTTAAAAAATCTCACAAGATTAGATCTATCTCACAATAGATTCAAAAGAGAGGTGTTTCCTTCAATAGTAAATCTCACAAAACTCACTTATCTTGCTTTGTCCTTTAATTCTCTTGAAGGTGAGTTACCACTTTTATTGGGAAACCTTAGAAAATTAAACTACTTAGACATATCCAACAACAAGATTCAAGGTTCCATTGTTTCACTAGAAAATCTCATACAACTACAAATTTTAGACATTTCAAACAATTTTTTCAATGGTTCCCTCCCATCTAACTTGGGTCAATTAACCAAATTGCAAGTGTTACAATTAAATAAAAACTTTCTCGGTGGAACCCTTCCAGTTTCGTTAAGAAATCTTTCTCAATTAAAAATTCTTGATATTTCCGACAAAACTTTCATAAACCTCAGTCACAATCTTATTAGTGGTGAAATTCCATCTTACATTGGAAATTTTCAACAACTTTATCTCAACAATAACAATTTAACTGGAAGAATTCCCCAATCTCTCTGTAGGGCCGGTTATATAGATATTTCCTACAATTGTATCAAGGATTTCGTTTCATTTTGTACTAACATTTATACAAGGAACAAGGATGAATGTATCGACATTTCTTTTAGACAATTCCAACCTTGGTCACCTCATAAGAGTAAGAATAAAGAAATGCATTTTGTTGTCATAGCTATTTCAATTTTTATTGTTCTAACTCTAGCATTCTCACTCCTAATATGCTTGAAACTTCGTCATAATTCTAAAAAGAAAAATCATGGAATCACAACGACAACAAAAGATGGAGATTTTTTTAGTATATGGAATTATGATGGAAAGATTGCATACGATGACATTATAAAAGCAACAGAAAACTTTGACATAAGATATTGCATCGGAACTGGCGGATATGGAAGTGTTTATAAGGCACAATTACCATGTGGCAAAGTTGTTGCCTTAAAGAAACTTCACGGATATGAAGCCGAGATTTCATCTTTTGATGAGAGTTTTAGAAATGAAGTGAGAATTTTATCAGAAATAAAGCATCGACATATTGTGAAACTTTATGGATTCTGCTTGCACAAAAGAATTATGTTTTTGATCTATCAGTACATGGAGAGAGGAAGTTTGTTTTCTATCTTGTATGATGATGTAGAAGCCATGGAATTCAATTGGAGAAAGAGGGTTAACTTTGTTAAAGGAGTCGCATTTGGTTTGTCATATCTTCATCATGATTGCCCAACTCCCATAGTGCATAGAGATGTATCTAGTGGCAACATCTTGCTAAACTCTAACTGGGAGCCAAGTGTAGCTGACTTTGGCACAGCTCGACTTCTCCAATATGAATCATCCAATCCAACTATAGTTGCTGGAACTATCGGATATATCGCTCCAGAACTTGTCTATACTATGGTTGTCAATGAAAAATGTGATGTATATAGTTTTGGTGTAGTTGCACTTGAAACTTTAGTGGGACGACACCCTGAAGATATTTTGTCATTACTTCAATCTACATCAATACAAGGTATCAAATTATGTGAAGTATTAGACAAACGTCTCTCACTTCCCAACAATGACATAGTTTTACGTGACATAATTCGTGTTGGCGCAATTGCATTTGCCTGCTTAAATCTCAATCCTTCTTTACGGCCAACAATGAAAAGTGTCTCACAAAATTTTGTCATTGAGCTTCCACCATTGAACATTCCTTTGAGTGGAATTTCGCTGCAACAACTCATGAGTCAAAAACTCAAAGCTTTATTTCACATTGTGAATCTTTGA 2649 0.3345 MNFKNSLVYNFYGQKICIAFLVIWGLIFGIESVTLKSQLQNEANAILKSRWWNTSDAQFNISRRCYWPDISCKKDGSIYEFSVKSARIYNVKFSALNLSAFDNLEILTLSSLNLEGAVLKEIGFLSKLTHLDLSSNYLEGKIPFSLENLTKLTHLNLSYNGFELKIPPSLKNLTKLTHLDLSSNIFKGEIVPSLGNFEQLKYLDISHNKFNGSIPNELGFQNNLTRLNLSFNRFKVEVLPSLENLTKLIHLDLSSNLLEGEIPQYSLGNLIQLQELDISNNMIQSFIPYELGFLKNLTRLDLSHNRFKREVFPSIVNLTKLTYLALSFNSLEGELPLLLGNLRKLNYLDISNNKIQGSIVSLENLIQLQILDISNNFFNGSLPSNLGQLTKLQVLQLNKNFLGGTLPVSLRNLSQLKILDISDKTFINLSHNLISGEIPSYIGNFQQLYLNNNNLTGRIPQSLCRAGYIDISYNCIKDFVSFCTNIYTRNKDECIDISFRQFQPWSPHKSKNKEMHFVVIAISIFIVLTLAFSLLICLKLRHNSKKKNHGITTTTKDGDFFSIWNYDGKIAYDDIIKATENFDIRYCIGTGGYGSVYKAQLPCGKVVALKKLHGYEAEISSFDESFRNEVRILSEIKHRHIVKLYGFCLHKRIMFLIYQYMERGSLFSILYDDVEAMEFNWRKRVNFVKGVAFGLSYLHHDCPTPIVHRDVSSGNILLNSNWEPSVADFGTARLLQYESSNPTIVAGTIGYIAPELVYTMVVNEKCDVYSFGVVALETLVGRHPEDILSLLQSTSIQGIKLCEVLDKRLSLPNNDIVLRDIIRVGAIAFACLNLNPSLRPTMKSVSQNFVIELPPLNIPLSGISLQQLMSQKLKALFHIVNL 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00144 882 ProSitePatterns Tyrosine protein kinases specific active-site signature. 706 718 IPR008266 GO:0004672|GO:0006468
Vivi6g00144 882 Pfam Leucine rich repeat 248 307 IPR001611 GO:0005515
Vivi6g00144 882 Pfam Leucine rich repeat 127 184 IPR001611 GO:0005515
Vivi6g00144 882 FunFam Nuclear pore complex protein NUP107 32 192 - -
Vivi6g00144 882 SMART LRR_sd22_2 173 199 - -
Vivi6g00144 882 SMART LRR_sd22_2 245 260 - -
Vivi6g00144 882 SMART LRR_sd22_2 294 320 - -
Vivi6g00144 882 SMART LRR_sd22_2 125 151 - -
Vivi6g00144 882 SMART LRR_sd22_2 389 415 - -
Vivi6g00144 882 SMART LRR_sd22_2 342 367 - -
Vivi6g00144 882 SMART LRR_sd22_2 270 291 - -
Vivi6g00144 882 SUPERFAMILY Protein kinase-like (PK-like) 564 847 IPR011009 -
Vivi6g00144 882 Gene3D Ribonuclease Inhibitor 266 360 IPR032675 -
Vivi6g00144 882 Pfam Protein kinase domain 587 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00144 882 Gene3D Phosphorylase Kinase; domain 1 543 660 - -
Vivi6g00144 882 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 210 426 - -
Vivi6g00144 882 Gene3D Ribonuclease Inhibitor 426 501 IPR032675 -
Vivi6g00144 882 Gene3D Ribonuclease Inhibitor 361 425 IPR032675 -
Vivi6g00144 882 ProSiteProfiles Leucine-rich repeat profile. 127 150 IPR001611 GO:0005515
Vivi6g00144 882 FunFam Os07g0541700 protein 661 748 - -
Vivi6g00144 882 SMART LRR_typ_2 197 221 IPR003591 -
Vivi6g00144 882 SMART LRR_typ_2 125 146 IPR003591 -
Vivi6g00144 882 SMART LRR_typ_2 270 293 IPR003591 -
Vivi6g00144 882 SMART LRR_typ_2 149 172 IPR003591 -
Vivi6g00144 882 SMART LRR_typ_2 294 314 IPR003591 -
Vivi6g00144 882 SMART LRR_typ_2 365 389 IPR003591 -
Vivi6g00144 882 SMART LRR_typ_2 442 466 IPR003591 -
Vivi6g00144 882 SMART LRR_typ_2 245 269 IPR003591 -
Vivi6g00144 882 SMART LRR_typ_2 318 342 IPR003591 -
Vivi6g00144 882 Gene3D Ribonuclease Inhibitor 33 167 IPR032675 -
Vivi6g00144 882 Gene3D Ribonuclease Inhibitor 168 265 IPR032675 -
Vivi6g00144 882 Pfam Leucine Rich repeat 343 360 IPR001611 GO:0005515
Vivi6g00144 882 Pfam Leucine Rich Repeat 199 218 IPR001611 GO:0005515
Vivi6g00144 882 SUPERFAMILY RNI-like 98 423 - -
Vivi6g00144 882 ProSiteProfiles Protein kinase domain profile. 582 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00144 882 Gene3D Transferase(Phosphotransferase) domain 1 661 852 - -
Vivi6g00144 882 PANTHER LEUCINE RICH REPEAT KINASE 2 266 850 - -
Vivi6g00144 882 FunFam Leucine-rich repeat receptor protein kinase MSP1 544 660 - -
Vivi6g00144 882 ProSitePatterns Protein kinases ATP-binding region signature. 588 610 IPR017441 GO:0005524
Vivi6g00144 882 ProSiteProfiles Leucine-rich repeat profile. 344 366 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00144 Vivi-Chr6 3734065 3746409 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00144 113 758 Receptor kinase-like Gene Family AT4G08850 36.572 6.40e-127 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi6g00144 Pkinase 3.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00144 - - mtr:25499829 910.983