Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00143 ATGTGGATGGCCTTTCTTCTTATTTGGAGTTTTATCATTGGGATCCAATCTGCCACTCCAACATCTCAACTTCAAATTGAAGCAAATGTCATATTGAAGAGTGGATGGTGGAACAAGTATGATGCCCAATTTAATATATCAAGACGTTGTCATTGGTACGGTATATCTTGCAATAAGGATGGAAGCATATATGAAATCAACATAAAATTGTATAGTATTTTTTTAGTTAATTTTTCAGCACTCAACCTATCTGTTTTTCACAATTTAGAAATTCTTGTTTTAAGTTCAATTGTTTTAGAAGGAGTTATTCCAAAAGAAATTGGTCTCCTCTCCAAGCTCACTCATCTTGATTTGTCTTCTAATCATCTTAAAGGTGGGATACCACCTTCACTAGGAAATCTCACAAAACTCACTCATCTTGATTTGTCTTCTAATCATTTTCAAGGTAAGATACCTCTTTCACTAGGAAAACTCACAAAACTCAGTCATCTTAATTTGTCCTTAAATCATCTTGTAGGTAAGATCCCACTTTCACTAAGAAGCCTTAGACAATTAAAATACTTAGACATCTCTGACAATAAGATTCAAGGTTTCATTCCTTCAATAGGAAATCTCACACACCTACAAGAGTTAGACTTGTCTAACAACAACATTCAAGGTTTCATACCTCATGAGTTGGGCTTCCTGAACAATCTCACAAGATTAGATCTATCTTACAATATACTAAATGGAAACTTGCCTCTTTCCATTACAAATCTCACCCAATTAGAACACATTAACATCTCTAACAACTTTCTCAGTGGTTCTCTCCCGTCCAACTTGGGCCAGTTAACAAAATTGAAAGTGTTAGAGTTAAGTACAAACTTCATTGATGGAACCTTTCCCATTTCGTTAACAAATCTCACGCATTTAGAAAAACTTGACATTTCCTATAATTTACTCTTTGGTTTCCTTCCCTCCAATTTTTATCAAATGGCAAATTATAAAACTTTCGTAATAGACCTCAGTCACAATTTTATTAGTGGTGAAGTTCCATCTCCGAATAGAAATTTTCAACAACTTTACCTCAATAATAACAATTTAACAGGAATAATTCCCCAATCTCTCTGTAATGCCGGTTATGTGGATATTTCCTACAACTGTTTCAACGGTCCCATTCCATATTGTACTAACATTTATACGAGGAACAAAGATGGATGTATCAGCACTTCTTTTAGAAAATTCCAACCATGGTCACCTCCCAAGAGAAATAATAAAGTAAAGCACAATCTTGTCATAGTTCTTCCTCTTTTTATTATTCTAATTCTAGCATTATCACTCCTTGTATGCTTGAAACTTCGTCATAGTTCTATAAAAAACAATCATGGAATTACAATGAAAACAAAGAATGGAGATTTGTTTTGTATATTGAATTACGACGGAAAAATTGCATATGATGACATTATTAAAGCAACCGAAGACTTTGATATAAGATATTGCATTGGAACAGGAGCATATGGAAGTGTTTATAAGGCACAGTTGCCATGTGGAAAAGTTGTTGCCTTAAAGAAACTTCACGGATATGAAGCAGAAATTCCATCTTTTGATGAGAGTTTTAGAAACGAAGTGAAAATATTATCCGAAATAAAACATCGACATATCGTGAAGCTTTATGGTTTTTGCTTGCACAAAAGAATTATGTTTTTGATCTATCAGTACATGGAGAGAGGAAGCTTGTTCTCTATCTTGTATAATGATGTAGAAGCCATGGAATTCAATTGGAGAAAAAGAGTTAACTTTGTTAAAGGAGTTGCATTTGGTTTGTCGTATCTTCATCATGATTGTCTAGTCCCAATAGTGCATAGAGATATATCTAGTGGCAACATCTTGCTAAACAGTGATTGGGAGGCAAGTGTAGCTGACTTTGGCACAGCTAGACTTCTTCAATATGAATCATCCAATCGAACTATAGTTGCTGGAACTATTGGATATATCGCTCCAGAACTTGCCTATACTATGGTTGTGAATGAAAAGTGTGATGTATATAGTTTTGGTGTAGTTGCACTTGAAACTTTAGTGGGAAGATATCCCGGAGATATATTGGCATTACTTCAATCAACATCAATCCAAGATATCAAATTATGTGAAGTATTAGACCAACGTCTCTCACTTCCAAACAATAATATAATTTTACGTGACATAATTCGTGTTGCCGCAAATGCATTTGCCTGCTTAAATCTCAATCCTTGTTTACGGCCAACAATGAAAATTATTTCGCAAAGTTTTGTCATTGAGCTTCCACCATTTAGCATTCCTTTGTCTGGAATTTCTTTGCAACAACTCATGAGTCATGAACTTAAAGCTTTATTTCACATTGTAAATCTTTGA 2367 0.3426 MWMAFLLIWSFIIGIQSATPTSQLQIEANVILKSGWWNKYDAQFNISRRCHWYGISCNKDGSIYEINIKLYSIFLVNFSALNLSVFHNLEILVLSSIVLEGVIPKEIGLLSKLTHLDLSSNHLKGGIPPSLGNLTKLTHLDLSSNHFQGKIPLSLGKLTKLSHLNLSLNHLVGKIPLSLRSLRQLKYLDISDNKIQGFIPSIGNLTHLQELDLSNNNIQGFIPHELGFLNNLTRLDLSYNILNGNLPLSITNLTQLEHINISNNFLSGSLPSNLGQLTKLKVLELSTNFIDGTFPISLTNLTHLEKLDISYNLLFGFLPSNFYQMANYKTFVIDLSHNFISGEVPSPNRNFQQLYLNNNNLTGIIPQSLCNAGYVDISYNCFNGPIPYCTNIYTRNKDGCISTSFRKFQPWSPPKRNNKVKHNLVIVLPLFIILILALSLLVCLKLRHSSIKNNHGITMKTKNGDLFCILNYDGKIAYDDIIKATEDFDIRYCIGTGAYGSVYKAQLPCGKVVALKKLHGYEAEIPSFDESFRNEVKILSEIKHRHIVKLYGFCLHKRIMFLIYQYMERGSLFSILYNDVEAMEFNWRKRVNFVKGVAFGLSYLHHDCLVPIVHRDISSGNILLNSDWEASVADFGTARLLQYESSNRTIVAGTIGYIAPELAYTMVVNEKCDVYSFGVVALETLVGRYPGDILALLQSTSIQDIKLCEVLDQRLSLPNNNIILRDIIRVAANAFACLNLNPCLRPTMKIISQSFVIELPPFSIPLSGISLQQLMSHELKALFHIVNL 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00143 788 ProSiteProfiles Leucine-rich repeat profile. 184 206 IPR001611 GO:0005515
Vivi6g00143 788 Gene3D Phosphorylase Kinase; domain 1 450 566 - -
Vivi6g00143 788 SMART LRR_typ_2 205 229 IPR003591 -
Vivi6g00143 788 SMART LRR_typ_2 182 204 IPR003591 -
Vivi6g00143 788 SMART LRR_typ_2 301 325 IPR003591 -
Vivi6g00143 788 SMART LRR_typ_2 134 158 IPR003591 -
Vivi6g00143 788 SMART LRR_typ_2 253 277 IPR003591 -
Vivi6g00143 788 SMART LRR_typ_2 110 133 IPR003591 -
Vivi6g00143 788 ProSitePatterns Protein kinases ATP-binding region signature. 494 516 IPR017441 GO:0005524
Vivi6g00143 788 ProSiteProfiles Leucine-rich repeat profile. 207 230 IPR001611 GO:0005515
Vivi6g00143 788 SUPERFAMILY Protein kinase-like (PK-like) 474 753 IPR011009 -
Vivi6g00143 788 Pfam Leucine Rich repeats (2 copies) 112 151 IPR025875 -
Vivi6g00143 788 FunFam Nuclear pore complex protein NUP107 21 177 - -
Vivi6g00143 788 Pfam Protein kinase domain 493 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00143 788 Gene3D Ribonuclease Inhibitor 174 412 IPR032675 -
Vivi6g00143 788 FunFam Leucine-rich repeat receptor protein kinase EMS1 222 321 - -
Vivi6g00143 788 Gene3D Ribonuclease Inhibitor 22 173 IPR032675 -
Vivi6g00143 788 ProSiteProfiles Protein kinase domain profile. 488 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00143 788 Pfam Leucine rich repeat 183 240 IPR001611 GO:0005515
Vivi6g00143 788 FunFam Leucine-rich repeat protein kinase family protein 452 566 - -
Vivi6g00143 788 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 201 756 - -
Vivi6g00143 788 FunFam MDIS1-interacting receptor like kinase 2 567 760 - -
Vivi6g00143 788 Pfam Leucine Rich Repeat 255 274 IPR001611 GO:0005515
Vivi6g00143 788 Pfam Leucine Rich Repeat 303 322 IPR001611 GO:0005515
Vivi6g00143 788 Pfam Leucine Rich Repeat 352 371 IPR001611 GO:0005515
Vivi6g00143 788 SMART LRR_sd22_2 229 255 - -
Vivi6g00143 788 SMART LRR_sd22_2 110 136 - -
Vivi6g00143 788 SMART LRR_sd22_2 182 207 - -
Vivi6g00143 788 SMART LRR_sd22_2 277 303 - -
Vivi6g00143 788 ProSitePatterns Tyrosine protein kinases specific active-site signature. 612 624 IPR008266 GO:0004672|GO:0006468
Vivi6g00143 788 SUPERFAMILY RNI-like 82 384 - -
Vivi6g00143 788 Gene3D Transferase(Phosphotransferase) domain 1 567 757 - -
Vivi6g00143 788 PRINTS Leucine-rich repeat signature 113 126 - -
Vivi6g00143 788 PRINTS Leucine-rich repeat signature 205 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00143 Vivi-Chr6 3719138 3722681 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00143 67 660 Receptor kinase-like Gene Family AT4G08850 38.110 3.10e-126 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi6g00143 Pkinase 1.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00143 - - mtr:25499829 943.725