Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00139 ATGCTAGTCACACACAACATTGTATGCAATTCATTACATCTCAAAATAATGAACTTCAAATATTCTTTACTTTATAATTTCTGTGGTCTGAAAATGTGGATGGTCATTCTTCTTGCAATAAGTATTGGAATTGAATCTGCCACTCCAACATCTCAACTTCAGATGGAAGCAAATGCCATATTGAAGAGTGGATGGTGGAACACGTCTGAGGCACAATTTAATATCTCAAGATGTTGTGATTGGCCCGATATATCTTGCAATAAGGATGGAAGCATATATGAAATCAACATAACAAGTATTAGTATTTATGATTTTTCCGCACTCAACCTATCTGTTTTCCACAATTTAGAAAGCCTTGTTTTAAGATCAATTGGACTGATAGGAGTTGTTCCAAAAGAAATTGGTCTCCTCTCCAAGCTCACTCTTCTTGATTTGTCCTCAAATGGTCTTGGAGGTGAGATCCCTCCTTTACTAGGAAATCTTACAAAACTCACTCATCTTGATTTGTCCTCAAATATTCTTGGAGGTGAGATCCCTCCTTCATTAGGAAATCTCACAAAACTCACTCATCTTTATCTGTTCTCAAATTCTCTTGTAGGTGAGATCCCTCCTTCACTAGGAAATCTCACAAAACTCACTCTTCTTGATTTGTCTTCTAATAATCTAAAAGGTGAATTGCCTCCTTCACTAGGAAATCTCACAAAACTCACTCTTCTTTACTTGTTCTCAAATGCTCTTGGAGGTGAGATCCCTCCTTCACTAGGAAATCTCACAAAACTCACTCTTCTTTACTTGTTCTCAAATGCTCTTGGAGGTGAGATCTCTCCTTCACTAGGAAATCTCACAAAACTCACTCATCTTGATTTGTCCTCAAATGTTCTTGGAGGTGAGATCCCTCCTTCACTAGGAAATCTTACAAAACTCACTCATCTTGATTTGTCCTCAAATGTTCTTGGAGGTGAGATCCCTCCTTATCTAGGAAACCTTAGACGATTAATCTACTTAGATATCTCTAACAACAACATTCAAGGTTTCATTCCTCATGAGTTGGGCTTCCTGAACAATCTCGCAAGATTAGATCTATCTTACAATAGACTAAATGGAAACTTGCCTCTTTCCCTTACAAATCTCACCAAATTAGAATACATTGACATCTCTAACAATTTTCTTAATGGTTCTCTCCCATCTAACTTGGGTCAATTATCCAAATTGAGAGTGTTACAGCTAAGTACAAACTTCATTTATGGGGCCATTCCTATGTCAGTAACAAATCTCTCACACTTAGAAAACCTTAACATTTCCCACAACTTACTCTTTGGTACCCTTCCTTCCAAGTTTTTTCAAATGGCAAGTTATAAAACTTTCGTAATAAACCTCAGTCACAATTTTATTAGTGGTGAAATCCCATCTCCGTATGGAACTTTTCAACACCTTTACCTCAACAATAACAATTTAACTGGATTAATTCCGCAATCTCTCTGTAATGTCGGTTATGTGGATATTTCCTACAATTGTATCAATGATCTCATTCTATCTTGTACTAACATCTATACGAGGAACAAGGATGAATGTATCGACATTTCTTTTAGACAATTCCAACCTTGGTCACCTCATAAGAGAAATAATAAAGAAAGGCACAGTGTTGTCATAGGTGTTTCAATCTTTATTATTCTAATTCTAGCATTATCACTCCTTGTATGCTTGAAACTTCGTCATAGTTCTATAAAAAACAATCATGGAATTACAATGAAAACAAAGAATGGAGATTTGTTTTGTATATTGAATTACGACGGAAAAATTGCATATGATGACATTATTAAAGCAACCGAAGACTTTGATATAAGATATTGCATTGGAACAGGAGCATATGGAAGTGTTTATAAGACACAATTACCATGTGGTAAAGTTGTTGCCTTAAAGAAACTTCACGGATACGAAGCAGAGATTCCATCTTTTGATGAGAGTTTTAGAAACGAAGTGAAAATATTATCCGAAATAAAACATCGACATATTGTGAAACTTTATGGTTTCTGCTTGCACAAAAGAGTTATGTTTTTGATATATCAGTACATGGAGAGAGGAAGTTTGTTTTCTATCTTGTATGATGATGCAGAAGCCATGGAATTCAATTGGAGAAAGAGGGTTAGCTTTGTTAAAGGAGTCGCATTTGGTTTGTCATATCTTCATCATGATTGCCCAACTCCTATAGTGCATAGAGACGTATCTAGTGGCAACATCTTAGTAAACTCCGAGTGGGAGCCAAGTGTGGCTGACTTTGGAACAGCTAGACTTCTTCAATATGAATCATCCAATCGAACGATAGTTGCTGGAACTATTGGATATATCGCTCCAGAACTTGCCTATACTATGGTTGTCAATGAAAAATGTGATGTATATAGTTTTGGTGTAGTTGCACTTGAAACTTTAGTGGGACGACACCCTGAAGATATTTTGTCATTACTTCAATCTACATCAATACAAGGTATCAAATTATGTGAAGTATTAGACAAACGTCTCTCACTTCCCAACAATGACATAGTTTTACGTGACATAATTCGTGTTGCCGCAATTGCATTTGCCTGCTTAAATCTCAATCCTTCTTTACGACCAACAATGAAAAGTGTCTCGCAAAGTTTTGTCATTGAGCTTCCACCATTGAACATTCCTTTGAGTGGAATTTCGCTGCAACAACTCATGAGTCAAGAACTTCAAGCTTTATTTCATATTGTGAATCTTTGA 2739 0.3614 MLVTHNIVCNSLHLKIMNFKYSLLYNFCGLKMWMVILLAISIGIESATPTSQLQMEANAILKSGWWNTSEAQFNISRCCDWPDISCNKDGSIYEINITSISIYDFSALNLSVFHNLESLVLRSIGLIGVVPKEIGLLSKLTLLDLSSNGLGGEIPPLLGNLTKLTHLDLSSNILGGEIPPSLGNLTKLTHLYLFSNSLVGEIPPSLGNLTKLTLLDLSSNNLKGELPPSLGNLTKLTLLYLFSNALGGEIPPSLGNLTKLTLLYLFSNALGGEISPSLGNLTKLTHLDLSSNVLGGEIPPSLGNLTKLTHLDLSSNVLGGEIPPYLGNLRRLIYLDISNNNIQGFIPHELGFLNNLARLDLSYNRLNGNLPLSLTNLTKLEYIDISNNFLNGSLPSNLGQLSKLRVLQLSTNFIYGAIPMSVTNLSHLENLNISHNLLFGTLPSKFFQMASYKTFVINLSHNFISGEIPSPYGTFQHLYLNNNNLTGLIPQSLCNVGYVDISYNCINDLILSCTNIYTRNKDECIDISFRQFQPWSPHKRNNKERHSVVIGVSIFIILILALSLLVCLKLRHSSIKNNHGITMKTKNGDLFCILNYDGKIAYDDIIKATEDFDIRYCIGTGAYGSVYKTQLPCGKVVALKKLHGYEAEIPSFDESFRNEVKILSEIKHRHIVKLYGFCLHKRVMFLIYQYMERGSLFSILYDDAEAMEFNWRKRVSFVKGVAFGLSYLHHDCPTPIVHRDVSSGNILVNSEWEPSVADFGTARLLQYESSNRTIVAGTIGYIAPELAYTMVVNEKCDVYSFGVVALETLVGRHPEDILSLLQSTSIQGIKLCEVLDKRLSLPNNDIVLRDIIRVAAIAFACLNLNPSLRPTMKSVSQSFVIELPPLNIPLSGISLQQLMSQELQALFHIVNL 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00139 912 Pfam Leucine Rich repeats (2 copies) 282 316 IPR025875 -
Vivi6g00139 912 Pfam Leucine rich repeat 327 366 IPR001611 GO:0005515
Vivi6g00139 912 FunFam MDIS1-interacting receptor like kinase 2 691 884 - -
Vivi6g00139 912 PRINTS Leucine-rich repeat signature 353 366 - -
Vivi6g00139 912 PRINTS Leucine-rich repeat signature 212 225 - -
Vivi6g00139 912 SUPERFAMILY RNI-like 119 463 - -
Vivi6g00139 912 Gene3D Transferase(Phosphotransferase) domain 1 691 882 - -
Vivi6g00139 912 FunFam Nuclear pore complex protein NUP107 50 202 - -
Vivi6g00139 912 Pfam Leucine Rich Repeat 211 233 IPR001611 GO:0005515
Vivi6g00139 912 Pfam Leucine Rich Repeat 476 495 IPR001611 GO:0005515
Vivi6g00139 912 Pfam Leucine Rich Repeat 379 398 IPR001611 GO:0005515
Vivi6g00139 912 Pfam Leucine Rich Repeat 163 185 IPR001611 GO:0005515
Vivi6g00139 912 Pfam Leucine Rich Repeat 187 209 IPR001611 GO:0005515
Vivi6g00139 912 PANTHER LEUCINE RICH REPEAT KINASE 2 353 880 - -
Vivi6g00139 912 Gene3D Ribonuclease Inhibitor 200 297 IPR032675 -
Vivi6g00139 912 Gene3D Ribonuclease Inhibitor 50 199 IPR032675 -
Vivi6g00139 912 SUPERFAMILY L domain-like 457 513 - -
Vivi6g00139 912 ProSitePatterns Protein kinases ATP-binding region signature. 618 640 IPR017441 GO:0005524
Vivi6g00139 912 Gene3D Ribonuclease Inhibitor 298 528 IPR032675 -
Vivi6g00139 912 Pfam Protein kinase domain 617 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00139 912 ProSitePatterns Tyrosine protein kinases specific active-site signature. 736 748 IPR008266 GO:0004672|GO:0006468
Vivi6g00139 912 FunFam Leucine-rich repeat receptor-like protein kinase TDR 219 472 - -
Vivi6g00139 912 SUPERFAMILY Protein kinase-like (PK-like) 598 878 IPR011009 -
Vivi6g00139 912 SMART LRR_sd22_2 353 385 - -
Vivi6g00139 912 SMART LRR_sd22_2 281 307 - -
Vivi6g00139 912 SMART LRR_sd22_2 401 427 - -
Vivi6g00139 912 SMART LRR_sd22_2 161 187 - -
Vivi6g00139 912 SMART LRR_sd22_2 209 235 - -
Vivi6g00139 912 SMART LRR_sd22_2 137 159 - -
Vivi6g00139 912 Gene3D Phosphorylase Kinase; domain 1 575 690 - -
Vivi6g00139 912 FunFam Leucine-rich repeat protein kinase family protein 576 690 - -
Vivi6g00139 912 SMART LRR_typ_2 161 185 IPR003591 -
Vivi6g00139 912 SMART LRR_typ_2 281 304 IPR003591 -
Vivi6g00139 912 SMART LRR_typ_2 425 449 IPR003591 -
Vivi6g00139 912 SMART LRR_typ_2 137 160 IPR003591 -
Vivi6g00139 912 SMART LRR_typ_2 233 257 IPR003591 -
Vivi6g00139 912 SMART LRR_typ_2 377 401 IPR003591 -
Vivi6g00139 912 SMART LRR_typ_2 305 329 IPR003591 -
Vivi6g00139 912 SMART LRR_typ_2 209 232 IPR003591 -
Vivi6g00139 912 ProSiteProfiles Protein kinase domain profile. 612 880 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00139 Vivi-Chr6 3672985 3684704 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00139 115 784 Receptor kinase-like Gene Family AT4G08850 38.354 7.42e-146 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi6g00139 Pkinase 4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00139 - - mtr:25501173 1022.31