Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00107 ATGCGGATGAGTTGTAACGGTTGTCGAGTACTAAGAAAAGGTTGCAGTGAAAATTGTAGCATAAGACCATGTTTACAATGGATAAAAAACCCTGAATCACAAGCTAACGCCACTGTCTTTTTAGCTAAATTCTACGGTCGTGCCGGCCTCATGAACCTCGTCAACGCCGGTCCCGAACATCTTCGCCCAGCAATTTTTAGATCATTGTTGTACGAAGCATGTGGTCGAATAGTGAACCCAATTTACGGTTCAGTTGGTTTGTTATGGTCTGGGAGCTGGCAGCTATGTCAAGCTGCGGTGGAAGCCGTTTTAAAAGGCGCGCCGATTACGCCGATTACATCAGAAGCAGCTACTCATGGAAGGGGTCCACCACTGAAGGCCTACGACATACGCCACGTGTCGAAAGACGAGAACTCGGCTGCGTCGATGGAGTTGACGCAGCAGCGAGTCAAGACTCGATCTCGTAAGAGGTCGAGCTTGGCTAAGCCGAAGTTACAAGAGGAGGTGAAAAATGGAAATGATGATAGGAGAATTGAATTCGGTTCGGTTGAACCGGTTGAGCCGGTTCAAGAGGTTTTTGTGAACCGGGCTGCGAGTCATGAGTCGTCGATTAGTCATCAGTCGGAGGCGGTGAATGCTACGGCGGCCGTGGATTTGGAGAGTAAAGAGAGTGAAAGTATGGCTTCCGTTGAAACGGCGGAGACGTCAATGAACTTGTTTAGAGATGAACCGGAGTCGAACCGGAATTTGAAGCGGACGGACCGAACCGGTGAGGAAAATGTTGGGTTAGAGCTGACTCTTGGGTTGGAACCGGTTTCACGTGTATATCATGTGGTTCCTGTTAAGAAAAGAAGGGTTGAGTTGAAGGATTGTGGTGGCGGTTCGTGGAATGTGGAGTTGGGGCTTCAGTATCCGGTTTAG 921 0.4908 MRMSCNGCRVLRKGCSENCSIRPCLQWIKNPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPITSEAATHGRGPPLKAYDIRHVSKDENSAASMELTQQRVKTRSRKRSSLAKPKLQEEVKNGNDDRRIEFGSVEPVEPVQEVFVNRAASHESSISHQSEAVNATAAVDLESKESESMASVETAETSMNLFRDEPESNRNLKRTDRTGEENVGLELTLGLEPVSRVYHVVPVKKRRVELKDCGGGSWNVELGLQYPV 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00107 306 PIRSF AS2 1 301 IPR017414 -
Vivi6g00107 306 MobiDBLite consensus disorder prediction 138 173 - -
Vivi6g00107 306 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 267 - -
Vivi6g00107 306 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Vivi6g00107 306 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00107 Vivi-Chr6 2638884 2640395 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00107 1 286 AS2 family AT3G02550 57.692 3.75e-109 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi6g00107 LOB 1.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00107 - - lja:Lj1g3v3317390.1 431.795