Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00030 ATGCGGGTGCCTCGACGCCGTCTTGCTCCGGTAAGCCGTGAAAAAACCGAACCAGCGGAGAGATACGTGAAGACACGCGCCGCTGTTGCGGCGGCGAAGAGAAACGAGCAGAAGAGGTCGGTTATCGTGATATCTGAGTCGGAGGAAGAAGAGATGGGAGATGAAAGTGGGGGTTTGAGTGCTAATAAAGGGGTTCCTCAAGAGGATGAGGGAAATACTACTCCTTTTCCTGAAAGGGTTCAAGTAGGAGGTTCGCCTGTGTACAAAGTGGAGAGGAAGCTTGGCAAAGGTGGGTTTGGACAGGTTTTCGTTGGTCGTCGAGTTACCGGTGGTAATGATCGTCTTAATGGCCCTGGTGCCACTGAGGTGGCTTTGAAATTTGAACATAGAAATAGTAAAGGATGTAACTATGGCCCTCCTTATGAGTGGCAAGTGTACAATACCCTTGGTGGAAGTCACGGAATACCTAAAGTACATTATAAAGGAAGACAAGGAGAATATTATGTGATGGTTATGGACATGCTTGGTCCAAGTTTGTGGGACGTATGGAATACCACAGGCCAGGCGATGTCTGCAGAAATGACCGCATGCATTGCTGTTGAGTCATTGTCTATCCTGGACAAGATGCACTCAAAGGGATATGTGCATGGAGATGTAAAGCCAGAAAACTTTTTACTAGGTCAGCCAGGTACAGCACAAGAGAAGAAATTGTTTCTTGTTGACCTCGGATTAGCCACAAAGTGGAGGGACACGTCCAATGGGCAGCATGTTGAATACGATCAACGCCCTGATATGTTCAGAGGAACTGTTCGATATGCAAGTGTTCATGCTCATTTGGGAAGAACTGCTAGTAGACGGGATGATCTTGAATCCCTTGCATATACACTCATTTTCCTTCATAAGGGCCGGTTACCATGGCAAGGTTATCAGGGAGATAATAAGTCCTATCTTGTTTGCAAAAAGAAGATGGGAACTTCTCCTGAGATGTTATGCTGCTTCTGCCCTGCTCCTTTCAGACATTTTCTTGAGTTTGTAGTGGGCATGAAATTCGATGAAGAACCTAACTATTCCAAGCTAATATCCCTGTTTGATGGTATGCTTGGACCAAATCCTGCATTGCGGCCAATTAATACTGAAGGTGCTCAAAAGGTTGGGCAAAAGAGGGGAAGATTGAATATTGAGGAAGAAGATGATTCACAGCCCAAGAAGAAGGTTCGTTTGGGGGTTCCTGCTACACAATGGATATCAATTTACAATGCAAGAATGCCAATGAAGCAAAGGTATCATTACAATGTAGCGGATGCAAGATTAGAACAGCATGTAGAGCGGGGAATCGCAGACGGCCTTCTTATTAGTTGTGTGGCTTCTTGTTCCAATCTCTGGGCACTTATTATGGATGCTGGAACTGGTTTTACAAATCAAGTTTACAAGTTGTCACCTTTATTCTTACATAAGGAATGGATCATGGAACAGTGGGAGAAGAATTATTACATTACTTCTATTGCTGGGGTTACAAATGGGAGCTCTCTTGTCGTGATGTCAAAAGGCACACAGTATACACAACAGTCATACAAAGTAAGCGACTCTTTCCCTTTCAAATGGATAAACAAGAAATGGAGAGAAGGTTTTCACGTGACTTCAATGGCCACTGCTGGAAGTCGTTGGGGTGTTGTCATGTCGCGAAATGCTGGATTCAGTGATCAGGTCGTTGAACTCGATTTTCTCTACCCTAGCGAAGGAGTCCATAGAAGATGGGATAATGGCTACAGAATAACAGCTACTGCTGCTACATGGGATCAATCTGCTCTTATATTAAGCAAACCGAGGCGCAGACCTGCAGATGAAACTCAGGAAACTCTCCGGACATCTCAATTTCCAAGTACACACGTTAAGGAAAAATGGTCTAAAAACCTTTACCTTGCTTGTTTGTGCTATGGACGTACAGTATGCTGA 1953 0.4455 MRVPRRRLAPVSREKTEPAERYVKTRAAVAAAKRNEQKRSVIVISESEEEEMGDESGGLSANKGVPQEDEGNTTPFPERVQVGGSPVYKVERKLGKGGFGQVFVGRRVTGGNDRLNGPGATEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEYYVMVMDMLGPSLWDVWNTTGQAMSAEMTACIAVESLSILDKMHSKGYVHGDVKPENFLLGQPGTAQEKKLFLVDLGLATKWRDTSNGQHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDNKSYLVCKKKMGTSPEMLCCFCPAPFRHFLEFVVGMKFDEEPNYSKLISLFDGMLGPNPALRPINTEGAQKVGQKRGRLNIEEEDDSQPKKKVRLGVPATQWISIYNARMPMKQRYHYNVADARLEQHVERGIADGLLISCVASCSNLWALIMDAGTGFTNQVYKLSPLFLHKEWIMEQWEKNYYITSIAGVTNGSSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNAGFSDQVVELDFLYPSEGVHRRWDNGYRITATAATWDQSALILSKPRRRPADETQETLRTSQFPSTHVKEKWSKNLYLACLCYGRTVC 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00030 650 SMART serkin_6 88 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00030 650 MobiDBLite consensus disorder prediction 1 20 - -
Vivi6g00030 650 Gene3D Transferase(Phosphotransferase) domain 1 67 408 - -
Vivi6g00030 650 CDD STKc_CK1 88 363 - -
Vivi6g00030 650 SUPERFAMILY Protein kinase-like (PK-like) 88 371 IPR011009 -
Vivi6g00030 650 FunFam casein kinase 1-like protein HD16 61 406 - -
Vivi6g00030 650 ProSitePatterns Protein kinases ATP-binding region signature. 94 126 IPR017441 GO:0005524
Vivi6g00030 650 ProSiteProfiles Protein kinase domain profile. 88 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00030 650 MobiDBLite consensus disorder prediction 34 81 - -
Vivi6g00030 650 Pfam Protein kinase domain 88 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00030 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Vivi6g00030 650 PANTHER CASEIN KINASE-RELATED 88 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00030 Vivi-Chr6 922222 927456 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00030 88 245 EF-hand Containing Proteins AT5G66210 27.545 1.98e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Vivi6g00030 Pkinase 5.2e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00030 - - mtr:11417788 1207.59