Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00025 ATGGCATCAACAACATGTTTTGTGAACAAGAATGAATTCCCTGTGAAAGTGATAACTCCTATCTCTCATTCATATCCTGAACCTATTGCAAAATATGATGATGTTGTGGCAAATCCAAAGCTATTCATGGTTACTTTGGAGAAGCTTCATGCTTCTATGGGCACCAAGTTCATGATTCCCATCATCGGAGGAAAAGAGCTAGATTTGTGTCAACTCTTCATTGAAGTGACTTCTCGTGGAGGGATTGAGAAGCTTATGAAAGAGAGAAGATGGAAAGAAGTAACAGCGGCTTTCAACTTTCCATCAACAGCTACAAATGCTTCCTTTGTTCTCAGAAAATACTATTCTTCACTACTTTATCACTATGAACAAATCTACTATTTTAGAGCAAATCGTTGGACTCCTGCACCTTCTGATACTTTGCATAATGAATCAACCATGTCAATTCCTCCTTCAATAACACAATTTTTGCAACCTTCTCCAATAACACAATCAGTTATCTTTCAAAAACCAGGACTTAATAATGCTTCTGAATTGCCTCAAGGTTCTTCACTTGCTGGAGTTATTGATGGAAAGTTTGAAAGTGGATATCTAGTTTCGGTTTCGATAGGATCAGAAACACTCAAAGGTGTACTATATGAGTCTCCGAAAAGCATTATGATTAATAATAATAGTGTTGCCTCTACTGCATTGGGTGTTCAACGTCGCCGGAGGAGGAGGAAGAAGTCGGAGATAAAAAGAAGAGATCCGGCTCATCCAAAACCTAACCGAAGTGGTTACAATTTCTTCTTCGCGGAGCAACATGCAAGATTGAAGCTACTAAACCAAACTATGGACAAGGATATTAGTAGAATGATCGGTGAACTATGGAACAATTTGAAGGACTCGGAGAAAACGGTTTATCAAGAGATGGCTATTAAGGATAAAGAGAGATACAAAGCGGAAATGGAGGATTATCGCGATAAACAAAAGACAAACATTGTAATCGATGACGCGATGCCAATGCAACAACAATTTCCGGAACCAAACTCGTCTTTGGTGGATGTTGACATAAAAATGCATGATTCATTACAGACTCCTGAAGAAAGTAGTTCTGGTGGAAGTGATTATGTTGGAGATGATATCAACATGGATGCTTCTTTGGATTCAGAAAAGGTTTCTAAGGATGGAGTTATTGACATTGTTAGTCATTGTGAGGGAGAAGTGGATGCTGGAAGAGTTCAAGTTCAAGAGAATCAAAACATGAATGAGAATCAAAACATGTTAGCATTACTTTAG 1278 0.3826 MASTTCFVNKNEFPVKVITPISHSYPEPIAKYDDVVANPKLFMVTLEKLHASMGTKFMIPIIGGKELDLCQLFIEVTSRGGIEKLMKERRWKEVTAAFNFPSTATNASFVLRKYYSSLLYHYEQIYYFRANRWTPAPSDTLHNESTMSIPPSITQFLQPSPITQSVIFQKPGLNNASELPQGSSLAGVIDGKFESGYLVSVSIGSETLKGVLYESPKSIMINNNSVASTALGVQRRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLNQTMDKDISRMIGELWNNLKDSEKTVYQEMAIKDKERYKAEMEDYRDKQKTNIVIDDAMPMQQQFPEPNSSLVDVDIKMHDSLQTPEESSSGGSDYVGDDINMDASLDSEKVSKDGVIDIVSHCEGEVDAGRVQVQENQNMNENQNMLALL 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00025 425 CDD HMG-box_AtHMGB9-like 253 319 - -
Vivi6g00025 425 Coils Coil 302 322 - -
Vivi6g00025 425 Pfam ARID/BRIGHT DNA binding domain 40 123 IPR001606 GO:0003677
Vivi6g00025 425 Gene3D - 31 136 IPR036431 GO:0003677
Vivi6g00025 425 Gene3D High mobility group box domain 237 333 IPR036910 -
Vivi6g00025 425 SMART ARID_2 33 123 - -
Vivi6g00025 425 MobiDBLite consensus disorder prediction 233 247 - -
Vivi6g00025 425 FunFam High mobility group B protein 15 30 144 - -
Vivi6g00025 425 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 22 362 - -
Vivi6g00025 425 Pfam HMG (high mobility group) box 253 320 IPR009071 -
Vivi6g00025 425 SUPERFAMILY HMG-box 241 323 IPR036910 -
Vivi6g00025 425 SMART hmgende2 252 321 IPR009071 -
Vivi6g00025 425 MobiDBLite consensus disorder prediction 357 376 - -
Vivi6g00025 425 MobiDBLite consensus disorder prediction 231 259 - -
Vivi6g00025 425 SUPERFAMILY ARID-like 35 133 IPR036431 GO:0003677
Vivi6g00025 425 ProSiteProfiles ARID domain profile. 36 127 IPR001606 GO:0003677
Vivi6g00025 425 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 253 320 IPR009071 -
Vivi6g00025 425 SMART bright_3 37 128 IPR001606 GO:0003677
Vivi6g00025 425 CDD ARID_HMGB9-like 38 123 IPR045303 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00025 Vivi-Chr6 762927 766495 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00025 1 353 ARID Transcription Factor Family AT1G04880 53.333 1.98e-118 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vivi6g00025 ARID 1.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00025 - - gmx:100783284 469.159