Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00021 ATGGCTTCATCTTTGCAGGAGCTTCTTGCAAAGGAAGGTTTCAAAGGAAGTAGCAAAAAGGTGCTAAAGTCAAGATCTTCTTTCCACCATGGTGCTTCAAGTGATCCACTTCATTCCTTGGAAGACAGACTCTGCGTATCATCGAGCGAACGAATCAAAACACAGAAAACAAAGTCGAAAACAGCCTCAAGGTATCAAACCAGCAATACAAATGACAGTAAGAACACAAGACCAAGGGTTAATAACAATAATGTTTTTGTCCAAAACAAGATAAGTCATGAACGATTGAAGAACGAGTCTCACGATTCATCAGAGAGTGATAGTGGATTCGAAGATGTTTATTCAAATCGAGTGTCTAATGCGAAAAGAGGCAAAGACAAGAAGGAAAAAATCGTGGAAAAGCCGATGAAGGATTCATATATGTTAAGACAATCAAGTGGAAATAGAAAGAGCTATGAAAATAACAATCAAGTTACGAATTCGCAAGATCCTTCTAATCTTGCTATTGATGAAATTGCTGTAAAAGCACTAGTTTCAATTCTGAATGGATACATAGAAAGTTTTCTAAAAGACGAAGATTTTAGGTCCGCGTTACGCCACAATTGTTTCTCCTCCTTGAACTTCATTCATCTCGAGAAGGAAGAAAACAACTCCGAGACCAAGGTGATCACGAGTCTCGAGCAAGCTATTGACTGCGTAGAGAAAACCGCTGAGAAAGACGAATCCATATCTCCAATACATTTGAAAAGAGCAACAATGCAGCTTAGTATTATCACAGGTTTGAGTTTGAATGATCTCAAATACGATTTCACGTGCGGGATTCCGAATTTCAAGTTATCGGCCTGTGCTCATCTTTACCTCAGTGTGGTATATTTGATGCAAAGAAAAAAGAAAGTTTCCGCGAAACATCTTTTGCAAGTCTTTTGCGATTCGTCTTTTCAGGCGCGGACGATATTGTTGCCTGAACTTTGGGAGCATTTATTTTCACCAAATCTTTCGCATTTGAAGAAATGGTATAATAGTAAAGAAAGTGAAATCGTTGCAGATACGCAAGCCAAAGCGCGAAAGCTAAAGATTCTTCAAAAAGTGTATAATGAAAACTTGGATTCAGGAACTCGAGTTTTCGCTTTATATTACAAAGATTGGCTCGGTGAAGGAGTCGAAACTCCAACTATTCCTTCTATTGGAATTCCATCATTATCAGTTACGAGTCGACAGGCGAGTTCGTTCGGTCATTCTTTTGAGTCTGGTAGCTCGAACGAACCATTCTCGCCACAGGCGATGGTAAGCAAGAAACTATATGATTCGTTCTTTGGCGGATATAGGAAACCTGAAGTTTATGAAGTTGAAGAAGATGATAAGGATGAAGATAGTTTTGAAAATTGTGAGAGAGGCTCTTATGGTTCAACCGTCGTTAAAAAAACGTTAATATACGAATCCGAAACTGTTAAGTTCATTGATCAAAGTAGTGAAGATTTCACTGCAAGTGTTCAAACTCATGAATTCAGAAAGGTGCAGCCGAATACGATAAGCTCTAATCTTGAAGGATCATATTTTCCAAGTATTCCGCCGGAATTTATTTGTCCTTTGACACGAAAGATCTTCGAGGAACCGGTCACCTTAGAGTCTGGCCAAACCTTCGAACGAAAAGCTATAAAGGCATGGTTTCAAAAGGGAAACCGAACATGTCCGGTAACAGGAAATACTTTAGAATGCGTGTTCATGCCGTTTACCAACCTTATCTTGAAGCGTTTGATCGATAACTGGAAGACAGAAGACTTCGACCGCCTTCTTGATTTCGCCTCTCAAACGGTGGAAAACTTAAAGGAATTTCAGATGAAAAAGCGCGATGAGGCTATCGTTTTCAAGTTACGAAGTCTTTTCACTTCGTTGAAAGAAGAAGAAAAATCAACTTATGCTAAGCATATAATCTCTTTAGGAGTTTTTTCGTCTCTTTTTAAGAGGTTTGAACTTGGAAACGTCGAAGAAAAATCGCATGTGCTGGAGATTTTGTTAAATTGTATTCAAGCTGATTCTAGTTGCGTATATAAGATCGCAAGAAGCGTCGACCGAAAAATGCTTCTCGAGCTTCTTCATAGCAAAATGGTTACTCCGTCAACAAATGCAATAGTTTTCCTTACTGAACTTTTGTCCATGAAGAGGAGAAAAGATGTTACTTTTTTCCTTAGTGGCTTGGTGGGTGAAGATGTATATAGTACAATGCATACTGTGCTCATGCATCTCAAGAGTTGTTCTCCAATTGAAAAGCCTCTCGTTGCGGTTCTCTTATTACACTTTGATCTACTGGTTGAGCCTCAAAAGTTAGGCGTATACATCGAGACGGCTGTGAATACCGTTGCCGAGGCACTTGATGCAAGCTTAAATGATGAGAAGGTCCAAAACAAGTGTTGCAAAGCTCTTTTAATCTTGTGTGGCCATTTTTCTTCCAACGGAAAAATAATGACCGATACCACCGTCTTAAAGCAAGCTGGTTATAAAAATGGTAGCTCGGAATTGAAATCTCCTAGCTATGATGAAGAGGATCAACAGTTAGACGTAACCATTTCATCGGAAGATGAGGAAGAAGAAAGGAATGAAGAGTTCATGATAAACTTGTTGGAATCGTTTATCGGCGATGGAGAGAGTCCATTTTTGAAAACCATATCTAGATGTTTAGAATCTAGACATATAGATTTGGTGAGGACTTGTCTCATATCTGTCACATGGTTGAGTTCCTCACTTTCTAAACAATATAACGCCGGATTGCATCTTCCCGCATTCTTAGCCGTCATCTCTCAACTAAAAGGAATCCTACAAAATGGCAAACTCGACCTCAAAACTCTCGCATCTATGTCATTGTTTAACTTCAGTAAAATATCAGAATGCCGAACACTTTTGAAGATTATGGCGCAAGATATTGCTCCGATACTTCATGGACTAGTTGATGTAATATGGACCGCGAAGAAACTGCATGCCATTTTGATGTAA 2988 0.3912 MASSLQELLAKEGFKGSSKKVLKSRSSFHHGASSDPLHSLEDRLCVSSSERIKTQKTKSKTASRYQTSNTNDSKNTRPRVNNNNVFVQNKISHERLKNESHDSSESDSGFEDVYSNRVSNAKRGKDKKEKIVEKPMKDSYMLRQSSGNRKSYENNNQVTNSQDPSNLAIDEIAVKALVSILNGYIESFLKDEDFRSALRHNCFSSLNFIHLEKEENNSETKVITSLEQAIDCVEKTAEKDESISPIHLKRATMQLSIITGLSLNDLKYDFTCGIPNFKLSACAHLYLSVVYLMQRKKKVSAKHLLQVFCDSSFQARTILLPELWEHLFSPNLSHLKKWYNSKESEIVADTQAKARKLKILQKVYNENLDSGTRVFALYYKDWLGEGVETPTIPSIGIPSLSVTSRQASSFGHSFESGSSNEPFSPQAMVSKKLYDSFFGGYRKPEVYEVEEDDKDEDSFENCERGSYGSTVVKKTLIYESETVKFIDQSSEDFTASVQTHEFRKVQPNTISSNLEGSYFPSIPPEFICPLTRKIFEEPVTLESGQTFERKAIKAWFQKGNRTCPVTGNTLECVFMPFTNLILKRLIDNWKTEDFDRLLDFASQTVENLKEFQMKKRDEAIVFKLRSLFTSLKEEEKSTYAKHIISLGVFSSLFKRFELGNVEEKSHVLEILLNCIQADSSCVYKIARSVDRKMLLELLHSKMVTPSTNAIVFLTELLSMKRRKDVTFFLSGLVGEDVYSTMHTVLMHLKSCSPIEKPLVAVLLLHFDLLVEPQKLGVYIETAVNTVAEALDASLNDEKVQNKCCKALLILCGHFSSNGKIMTDTTVLKQAGYKNGSSELKSPSYDEEDQQLDVTISSEDEEEERNEEFMINLLESFIGDGESPFLKTISRCLESRHIDLVRTCLISVTWLSSSLSKQYNAGLHLPAFLAVISQLKGILQNGKLDLKTLASMSLFNFSKISECRTLLKIMAQDIAPILHGLVDVIWTAKKLHAILM 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00021 995 MobiDBLite consensus disorder prediction 118 137 - -
Vivi6g00021 995 MobiDBLite consensus disorder prediction 59 91 - -
Vivi6g00021 995 SUPERFAMILY ARM repeat 581 977 IPR016024 -
Vivi6g00021 995 CDD RING-Ubox_PUB 523 571 IPR045210 -
Vivi6g00021 995 Pfam U-box domain 522 592 IPR003613 GO:0004842|GO:0016567
Vivi6g00021 995 SUPERFAMILY RING/U-box 515 592 - -
Vivi6g00021 995 MobiDBLite consensus disorder prediction 14 163 - -
Vivi6g00021 995 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 521 594 IPR013083 -
Vivi6g00021 995 MobiDBLite consensus disorder prediction 141 163 - -
Vivi6g00021 995 MobiDBLite consensus disorder prediction 92 108 - -
Vivi6g00021 995 SMART Ubox_2 525 589 IPR003613 GO:0004842|GO:0016567
Vivi6g00021 995 ProSiteProfiles U-box domain profile. 521 596 IPR003613 GO:0004842|GO:0016567
Vivi6g00021 995 PANTHER OS04G0584500 PROTEIN 495 993 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00021 Vivi-Chr6 712319 717329 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00021 521 598 U-box Gene Family AT5G37490 37.179 2.00e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00021 - - lja:Lj1g3v3329610.1 1246.88