Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00017 ATGTCTGCTTTCATTACCCCTAGATTCGTTCTTAACAAGTTTTTGGCTAAATCTCAACGTGAAGGTCAAGGTGCTATTGTTAGAAGAGGCATTGGAAGAAGTGAGTTGAAGAACTTGGATCCTTTTCTATTGCTTGATCATTTCTCAGTGTCTCCTCCTGGAGGATTTCCTGATCATCCACACAGAGGTTTTGAGACAGTCACTTACGTGCTAGAGGGAGGGATTACTCATCAAGATAATGCTGGTCACAAGGGTACAATAAGAAGTGGTGATATTCAGTGGATGACTGCAGGCAGAGGAATTATTCACTCTGAAATGCCTGCTGAACAAAACAACAATGGATTGCAACTCTGGATCAATTTATCAGCCAATGAAAAAATGATTGATCCAAACTATCAAGAAATTCTAAGTGAGGACATACCCTCCGGAGAAAAAGATGGTGTTGAAGTGCGAGTAATAGCCGGAGAATCAATGGGAATAAACTCTCCCGTCTACACAAGAACACCGACCATGTACCTAGATTTCACCATGAATCCCGGAACTCATCTGAATCAAACCATTCCGGAATCATGGAATTCTTTCGCGTACATAATCGAAGGAGAAGGTGTTTTTGGTTCACCAAATTCATCACCAATTATGGCTCATCATGTCATTGTTTTCACACAAGGTGATGGAGTTAGTGTTTGGAACAAGAACTCTTCAAAGCCTTTAAGGTTTTTGCTCATTGGTGGACAACCTTTGAATGAACCTGTGGCTCAATATGGTCCTTTTGTCATGAATACACAATCTGAGATTGAGAAGACTATTGAAGATTATCAACATGGTAGAAATGGCTTTGAGATTAAACTAAATTAG 855 0.4 MSAFITPRFVLNKFLAKSQREGQGAIVRRGIGRSELKNLDPFLLLDHFSVSPPGGFPDHPHRGFETVTYVLEGGITHQDNAGHKGTIRSGDIQWMTAGRGIIHSEMPAEQNNNGLQLWINLSANEKMIDPNYQEILSEDIPSGEKDGVEVRVIAGESMGINSPVYTRTPTMYLDFTMNPGTHLNQTIPESWNSFAYIIEGEGVFGSPNSSPIMAHHVIVFTQGDGVSVWNKNSSKPLRFLLIGGQPLNEPVAQYGPFVMNTQSEIEKTIEDYQHGRNGFEIKLN 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00017 284 Pfam Pirin C-terminal cupin domain 172 278 IPR008778 -
Vivi6g00017 284 Pfam Pirin 28 119 IPR003829 -
Vivi6g00017 284 Coils Coil 276 284 - -
Vivi6g00017 284 PIRSF Pirin 6 283 IPR012093 -
Vivi6g00017 284 CDD cupin_pirin_C 169 246 - -
Vivi6g00017 284 Gene3D Jelly Rolls 141 247 IPR014710 -
Vivi6g00017 284 FunFam pirin 21 152 - -
Vivi6g00017 284 SUPERFAMILY RmlC-like cupins 8 280 IPR011051 -
Vivi6g00017 284 PANTHER PIRIN-RELATED 4 280 IPR012093 -
Vivi6g00017 284 Gene3D Jelly Rolls 21 273 IPR014710 -
Vivi6g00017 284 CDD cupin_pirin_N 27 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00017 Vivi-Chr6 679195 681383 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00017 6 281 Calmodulin-binding Proteins AT3G59220 66.065 1.15e-139 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00017 K06911 - gmx:100775597 477.633