Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi698g00017 ATGACGGAACGTTCTCAAAAAGAAAAGGTTTTCCGAACAATGGAAAACGACAATGTCGTTTTCAGAAACGGCAACCCAGTTCTCGTCGCTCAGCCCCTCACCGTTGTCCGTGCCCTAACTAGCAACGGCGGCGGTCGCGTTCTTGCAACGCCGCCGAGTCTGAACCCTAACTCCGATCAGTTCGAAGCACGCGAATCGCCGATGATCAAAGTGAAGGACGAGCCTCAAGAAGATGTCAAACCTTTCACTTTATGCTCTCAATCTGCGGCGAATGTTTCTGTGGAGCCACGTTCAATGCTCTTGTTCGATGATTTTTTAAAGGCTACGAATACACAAGTTGCCACTGTCGAGGAATCGATGAAATCAATGGAAGTTGAATCAACGATTCAAACGAAGACGCAGGGTTTGGTTAAGGCTGAATTGGTAGATGAATCGCTGAAATCAATGGAAGTTGAACCACCTATGAGGACTAAGGAAGAAGCTGTCAATGTCAATGTGGTTTTTGAGGCTCAGGAATCGGTAACCGTTGATCCGATTAAAGAACCAACGCGGGTTCAACCAAATGAAGAGGCTTCCAAGGAGAAGGGAACTGATAGTGATGAATTGGAGGTGTTGAAGGTAGTGAAAGGGAAACAAGCTGTTAATGATGAAGTGAGGGTTTCAAAGGTGGTGAAGAAAGAGGCAGTGGAAGAGAAGATTCCGAATCTTGAGGATGGCGAGTTTCCTGTTGAACCTGGGTGGTCATTGTTGGGAAGGAAGATTGAGGTTGCTACTTCTACAGCTAGAGGACTGAGGAGGTTGGTGGATAATGAGATTGTTTATTTCAATTTTCCTGACCCAAATACCTCTTACAAGTTCCAATGGATTGTTCGCGTCTCAACCAAACGTTCTGGAGTGGTTGGGAGGCTGCCAATGGAATGGGCAAAATCTGTCATGCCTCTCGTGCAATCTGGAAATGTTAGGGTTCGAGGCCGATGTGTTGCCACACCACATAAATTGGAAATGATGCAAGAAATAATGTTGTTAGTGAGTTTTTATGTTCATCAATCTGTATTCTCTGAGTCTGTTGATACCTCTTGGAGGCTTGAGGCTTGTGGCCACATTAACTCTGCTTCTTACCCGCTCCTTACACTGTTGAACATGCTAGATATTGAGCCTTATAGGAAGGCTGATTTCACCCCTGAGGAAATGAAGGCTCGGAAGCGGGTTCTTAAACTTGATTCAGATGAAGCTTCAGTTTTGCCTGTTAATAAGCGAAGAAAAGGCATCAGTGAGCCACTTCCAGAGCCAAACGAGAATGAACAAGCTCTTTCAGAGTCAGCTTTGAATAAACTTATTGGAGCTGCTGAAGTCTTTGACCTACAGGAGAAGGAAGCACCAAAAACCCTGATGTGTAGTCTAAAGCCTTACCAGAGTCAAGCTCTGTATTGGATGACAGAAATTGAGAAGGGAACTGAAGATGAAAATGCTGATAGAAATCTACATCCTTGCTGGTCAGCCTACAATATATGCAATGGAAGGACAATTTATGTGAACATATTTACTGGGGAGGCGGCAAAGAAATTTCCACAAGCAACACAGAGAGCAAGAGGAGGAATTCTGGCGGATGCAATGGGACTTGGAAAGACTGTTATGACAATTGCTTTGATATTAAGTAATCCAGGCAGGGTGAAGTCAGAAGACAGTGATGCAGAGAGCACATATGACAACATTTTCTCAACTAAGAGGAGGAATATTAACAATGTAGAGGGTGGCACTCTGATTGTTTGTCCCATGGCATTATTGGGTCAGTGGAAGGATGAGCTTGAAACACATTCAAAACCAGGCAGTATATCCGTATTCGTTCACTATGGTGGGGGTAGAACTGATAATGTCAATTTGTTGTTAGAGTACGATGTTGTCTTGACAACATATGGTGTCCTATCAGCTTCATTTAAAAATGATGGAGGGAATAGCATCTACCACAGGGTCCAATGGTTCAGAGTGGTGTTAGACGAAGCTCATCATATTAAAGCCCATAAAAGTCAGGTTGCCCAGGCTACTATTGCCCTGTCCTCACACTGCCGCTGGTGTCTAACTGGAACACCGCTTCAGAATAGTTTGGAAGATCTATTCAGTCTCTTGTCTTTCTTGCGCGTTGAACCTTGGTGCAGCTGGCAGTGGTGGACTAAGTTGATTCAAAAGCCCTATGAGCAGGGTGATCAAAGAGCCCTGAAATTGGTCAAGGGAATTTTAAGGACATTGATGTTAAGAAGAACCAAGGAAACAAAGGATAAAGAAGGAAGGCCTATACTTGTTCTACCACCAACTGATATTCAATTGATTGAGTGTGAACAGTCAGAATCTGAACGGGACTTCTATGATGCTCTCTTCCTGAGATCTAAAGTCCAATTTGAGCAATATGTTGCACAAGGAAAGATTCTTAACCACTATGCAAATATCCTTGACCTACTAATGCAGTTAAGACGGTGCTGCAACCATCCATTATTGGTCATGAGTGGAAGTGATCCTTCGAAGTATGCAGACTTGAGCAGACTTGCAAGAAAATTTCTTGATTCTCATACTGAATCATCTGATATGCGCTGTGAAAATGATACACAGCAAAATGCAAAACTGAACAAACTCGCTAGTACTTTCCTACAGAATTCTATTTCTGCTTCCCGTTCTATCCAATCTCATGGTTACATTGATGAGGTTTTGGGTCATATTCAAAAGGGTGAAGTTGTAGAATGCTCTATATGTTTGGAATCACCAGAAGATCCTGTTTTTACACCATGTGCACATCAGTTTTGTAGAGAATGTCTATTCAATTGCTGGGGTACCTCAATGGGTGGCAAGTGTCCAATCTGTCGTCAATTACTCAAGAAAAATGATCTTATTGTACTTCCATCAGAAAGTCCATTCAAGGTTGATACTGAGAACAATTTGACGGAGTCTTCAAAAGTTTCAAAGCTGTTTGATTTCTTAGAATATATTCAGAAATATTCTGATGAAAAAAGTATTGTTTTTAGTCAATGGACTTCATTTTTTGATCTGTTAGAAAATCCATTGAGGAGGAGAGGGATAGGATTCTTGAGATTTGATGGAAAATTGACTCAGAAGCAGAGGGAAAAAGTTCTGAAAGAATTTAACAACACAAAAGAGAAAAGGGTTTTGTTGATGTCACTAAAAGCTGGTGGTGTGGGCTTAAACTTGACTGCAGCCTCAAATGTTTTCCTAATGGATCCATGGTGGAATCCTGCAGTTGAGGAGCAAGCTATAATGAGGATTCATCGTATTGGGCAAAAGCGAAGGGTTACTGTAAGAAGATTCATTGTGAAGAACACAGTGGAAGATCGTTTGCAACAAGTGCAAGCCAAGAAACAGAAGATGATATCTGGTGCACTCACTGATGATGACGTTCGGACTTCCAGGATTCAAGACCTCAAAATACTATTCTCATAG 3444 0.4225 MTERSQKEKVFRTMENDNVVFRNGNPVLVAQPLTVVRALTSNGGGRVLATPPSLNPNSDQFEARESPMIKVKDEPQEDVKPFTLCSQSAANVSVEPRSMLLFDDFLKATNTQVATVEESMKSMEVESTIQTKTQGLVKAELVDESLKSMEVEPPMRTKEEAVNVNVVFEAQESVTVDPIKEPTRVQPNEEASKEKGTDSDELEVLKVVKGKQAVNDEVRVSKVVKKEAVEEKIPNLEDGEFPVEPGWSLLGRKIEVATSTARGLRRLVDNEIVYFNFPDPNTSYKFQWIVRVSTKRSGVVGRLPMEWAKSVMPLVQSGNVRVRGRCVATPHKLEMMQEIMLLVSFYVHQSVFSESVDTSWRLEACGHINSASYPLLTLLNMLDIEPYRKADFTPEEMKARKRVLKLDSDEASVLPVNKRRKGISEPLPEPNENEQALSESALNKLIGAAEVFDLQEKEAPKTLMCSLKPYQSQALYWMTEIEKGTEDENADRNLHPCWSAYNICNGRTIYVNIFTGEAAKKFPQATQRARGGILADAMGLGKTVMTIALILSNPGRVKSEDSDAESTYDNIFSTKRRNINNVEGGTLIVCPMALLGQWKDELETHSKPGSISVFVHYGGGRTDNVNLLLEYDVVLTTYGVLSASFKNDGGNSIYHRVQWFRVVLDEAHHIKAHKSQVAQATIALSSHCRWCLTGTPLQNSLEDLFSLLSFLRVEPWCSWQWWTKLIQKPYEQGDQRALKLVKGILRTLMLRRTKETKDKEGRPILVLPPTDIQLIECEQSESERDFYDALFLRSKVQFEQYVAQGKILNHYANILDLLMQLRRCCNHPLLVMSGSDPSKYADLSRLARKFLDSHTESSDMRCENDTQQNAKLNKLASTFLQNSISASRSIQSHGYIDEVLGHIQKGEVVECSICLESPEDPVFTPCAHQFCRECLFNCWGTSMGGKCPICRQLLKKNDLIVLPSESPFKVDTENNLTESSKVSKLFDFLEYIQKYSDEKSIVFSQWTSFFDLLENPLRRRGIGFLRFDGKLTQKQREKVLKEFNNTKEKRVLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKRRVTVRRFIVKNTVEDRLQQVQAKKQKMISGALTDDDVRTSRIQDLKILFS 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi698g00017 1147 SMART ring_2 911 950 IPR001841 -
Vivi698g00017 1147 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 523 714 IPR014001 -
Vivi698g00017 1147 Pfam Zinc finger, C3HC4 type (RING finger) 911 950 IPR018957 GO:0046872
Vivi698g00017 1147 Pfam Helicase conserved C-terminal domain 983 1094 IPR001650 -
Vivi698g00017 1147 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 452 752 IPR027417 -
Vivi698g00017 1147 CDD DEXDc_SHPRH-like 467 752 - -
Vivi698g00017 1147 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 281 1146 - -
Vivi698g00017 1147 FunFam DNA repair protein RAD5B 520 753 - -
Vivi698g00017 1147 Pfam SNF2-related domain 470 830 IPR000330 GO:0005524|GO:0140658
Vivi698g00017 1147 SMART HIRAN_2 250 347 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vivi698g00017 1147 ProSitePatterns Zinc finger RING-type signature. 926 935 IPR017907 -
Vivi698g00017 1147 SMART ultradead3 463 733 IPR014001 -
Vivi698g00017 1147 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 765 1137 IPR027417 -
Vivi698g00017 1147 Gene3D - 768 891 IPR027417 -
Vivi698g00017 1147 Pfam HIRAN domain 262 341 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vivi698g00017 1147 Coils Coil 106 126 - -
Vivi698g00017 1147 SMART helicmild6 1011 1094 IPR001650 -
Vivi698g00017 1147 CDD SF2_C_SNF 967 1105 - -
Vivi698g00017 1147 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 901 959 IPR013083 -
Vivi698g00017 1147 ProSiteProfiles Zinc finger RING-type profile. 911 951 IPR001841 -
Vivi698g00017 1147 SUPERFAMILY RING/U-box 907 961 - -
Vivi698g00017 1147 Gene3D - 960 1145 IPR027417 -
Vivi698g00017 1147 Gene3D - 518 764 IPR038718 -
Vivi698g00017 1147 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 984 1143 IPR001650 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi698g00017 184 1146 RAD5 or RAD16-like Gene Family AT5G43530 58.564 0.0 1158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi698g00017 SNF2_N 2.4e-81 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi698g00017 K15505 - gmx:100806677 1462.97