Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi692g00001 ATGGCTCTTACTTTAGGAACTACATTTTCTCATATACTCATATTTATAGGTTCACTCTTAATATTCCTAGTAACCCCTTCATCTTGTTTTAAGCCCAAAACACTTTTTAGTGTTTCTTCAAACTTCACAACTGATTCAGGTTATTCATCTACAATGGCTACTTGGTATGGACCTCCCGAAGGTGATGGGAGTGAAGGTGGTGCTTGTGGATACCAAAATGCTGTTGGTCTGCCTCCTTTCAACTCAATGATATCAGCAGCAAACCCCTCCATCTATCAATCAGGCAAAGGTTGTGGTTCATGTTATCAGGTGAAGTGCACTGAAAATCCGGCTTGCTCAGGAAACCCTTTTACTGTAGTTATCACTGATGAGTGTCCTGGTTGTGATCATTATTTTGATTTGAGTGGAAAAGCTTTCGGTTCCATGGCAATTTCAGGTCAAGCTGACAATCTACGCAATGCTGGAAAAATACCAGTCGAATATCAAAGAGTTACATGCAATTACCCAGGTGTGCCGATAGCTTTCCATGTTGACTTTGGATCTAACCAAGACTATTTTGCAACTGTTATTGAATATGAGAATGGGGATGGTGATCTCAAAACAGTTGAACTCAAAGAAGGAAATTCGGAAACTTGGGAAGCTATGCAACAATCATGGGGTGCTGTTTGGAAATTTAATAAAGGGGCACAATTAAATGAACCATTTTCTATTAGGCTAACAACAATTGAGTCTGGAAAAATGTTTGTGGCTAATAATGTGATTCCTGTAGGTTGGCAGCCAGGTCAAACTTACCGAGCAATTGGAAATATTAATTAA 816 0.3922 MALTLGTTFSHILIFIGSLLIFLVTPSSCFKPKTLFSVSSNFTTDSGYSSTMATWYGPPEGDGSEGGACGYQNAVGLPPFNSMISAANPSIYQSGKGCGSCYQVKCTENPACSGNPFTVVITDECPGCDHYFDLSGKAFGSMAISGQADNLRNAGKIPVEYQRVTCNYPGVPIAFHVDFGSNQDYFATVIEYENGDGDLKTVELKEGNSETWEAMQQSWGAVWKFNKGAQLNEPFSIRLTTIESGKMFVANNVIPVGWQPGQTYRAIGNIN 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi692g00001 271 PRINTS Expansin/Lol pI family signature 212 226 IPR007118 GO:0005576
Vivi692g00001 271 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Vivi692g00001 271 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Vivi692g00001 271 PRINTS Expansin/Lol pI family signature 252 266 IPR007118 GO:0005576
Vivi692g00001 271 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Vivi692g00001 271 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Vivi692g00001 271 SUPERFAMILY Barwin-like endoglucanases 35 170 IPR036908 -
Vivi692g00001 271 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 171 IPR007112 -
Vivi692g00001 271 Gene3D - 167 266 IPR036749 -
Vivi692g00001 271 PANTHER EXPANSIN-B3 35 266 - -
Vivi692g00001 271 Gene3D - 32 166 IPR036908 -
Vivi692g00001 271 SMART dpbb_1 84 161 IPR007112 -
Vivi692g00001 271 Pfam Expansin C-terminal domain 173 255 IPR007117 -
Vivi692g00001 271 Pfam Lytic transglycolase 85 161 IPR009009 -
Vivi692g00001 271 SUPERFAMILY PHL pollen allergen 173 265 IPR036749 -
Vivi692g00001 271 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 266 IPR007117 -
Vivi692g00001 271 CDD DPBB_EXPB_N 53 166 - -
Vivi692g00001 271 PRINTS Major pollen allergen Lol pI signature 191 206 IPR005795 GO:0005576|GO:0019953
Vivi692g00001 271 PRINTS Major pollen allergen Lol pI signature 175 190 IPR005795 GO:0005576|GO:0019953
Vivi692g00001 271 PRINTS Major pollen allergen Lol pI signature 86 97 IPR005795 GO:0005576|GO:0019953
Vivi692g00001 271 PRINTS Major pollen allergen Lol pI signature 221 238 IPR005795 GO:0005576|GO:0019953
Vivi692g00001 271 PRINTS Major pollen allergen Lol pI signature 106 116 IPR005795 GO:0005576|GO:0019953
Vivi692g00001 271 PRINTS Major pollen allergen Lol pI signature 143 158 IPR005795 GO:0005576|GO:0019953
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi692g00001 29 271 Expansin Gene Family AT1G65680 55.466 9.35e-98 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi692g00001 - - gmx:548090 372.474