Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi691g00004 ATGAGTGGCCGGAAATGGGACCGGAGAGACAACCGAACATCAAAGAAGCAGAAATTGATCAAGAGCGCCGAGGAAGAACTTGAAGCAAAGCTAGGGTTCGATCTTTTCTCCGAAGGGGAAAAGCGTCTTGGATGGTTGCTCACTTTTTCAACGTCATCTTATGAAGACGAGGATACCCGCAAAGCCTACAGTTGCGTTGATCTTTACTTTGTCACACAGGACGGGTCTTCATTCAAGACAAAATACAGATTTCGTCCTTATTTCTATGTAGCTACAAAGAATAAAATGGAGATGGATGTTGACGCATACCTGAGACGACGTTATGAAGGCCAGATTGCAGATATCAAAATCGTAGAAAAGGAAGATCTGGATCTTAAAAACCATTTGTCTGGATTAAGAAAATCTTATCTAAAGATTTCATTTGATACCGTGCAACAACTGATGAATGTGAAGAGTGACCTGATGCATGTTGTTGAAAGAAATAAGGCGAAGTCTGATGCTGCAGAAGCCTATGAGTCCATATTATCGGGGAGAAGAGAACAAAAACTTCAAGATTTTCTAGATTGCATAATTGATCTTCGTGAATATGACGTTCCTTACCATGTTCGCTTTGCTATTGACAATGATATACGGTGTGGCCTGTGGTATGATGTTGGCGTGTCCACTGATGGGGTTACACTTCAAAGAAGGACAGATCTTCTACAGCGTGCTGAAGTTCGTGTTTGTGCATTTGATATCGAGACTACAAAACTTCCTTTGAAGTTTCCTGATGCTGACTATGATTCAGTTATGATGATTTCATATATGGTAGATAGGCAAGGGTATTTAATCATAAATAGAGAGTGTGTTGGGGACGATATAGAGGATTTAGAGTTCACTCCAAAACCAGAGTTTGAAGGGTGTTTCAAGGTGACAAATGTTCAAAATGAGATTGAGCTTCTTAGAACATGGTTTTCTCATATGCAAGAGGTGAAACCTGGTATCTATGTGACATATAATGGTGATTTCTTTGACTGGCCATTCCTGGAACGACGGGCAGCCCATCACGGGTTAAAAATAAGTGATGAACTGGGGTTTCAATGTGACATGAACCAAGGGGAATGTCGTGCTAAATTTGCTCCCCATTTAGATTGCTTTGCGTGGGTTAAACGTGACAGTTATCTTCCTCAAGGGAGCCAAGGCCTCAAGGCTGTAACAAAAGCCAAGCTGGGATATGATCCAGAGGAGGTGAACCCTGAGGACATGGTACGCTTTGCAAAGGAAAAGCCTCAGATGATGGCCTCCTATTCTGTTTCTGATGCAGTGTCAACATATTACCTATATACAACTTATGTTCATCCCTTTATTTTCTCGCTTGCCACTATCATTCCCATGTCACCAGATGAGGTTTTGCGCAAAGGCAGTGGGACCCTCTGTGAAATGTTGCTTATGGTCCAGTCATACGAGGCTAATGTTATCTGCCCTAACAAGCACCAATCTGATCCGGAGAAGTTTTATAAGAATCATCTTCTTGAGAGTGAGACGTATATAGGTGGCCATGTTGAATGCCTAGAAAGTGGTGTATTTAGATCTGATATTCCATGTAGTTTTACACTCGAGCCATCTGCCTTTGAGCAATTGATCAAAAACCTTGACCGAGATCTACAGTATGCTATAAGAGTTGAGGGTAAGATGGATTTAGAATCTGTATCAAATTATGATGAAGTGAAGGATGCTATCATGGAAAAGCTTGTAAAATTACGAGATGCACCAATACGTGATGAATGCCCCCTCATTTATCATTTGGATGTAGCTGCAATGTATCCAAACATAATTTTAACAAACCGACTTCAGCCTCCATCAATTGTTACGGACGAGATTTGCACTGCATGTGACTTTAACCGTCCCGGAAAGACTTGTCTACGCAAGCTTGAATGGGTTTGGCGTGGAGAAACATTCACGGCAAAGAAAAGTGACTATTATCATCTAAAGAAGCAAATTGAGTCAGAGTTTGTCGATGGAGTAAATGAAAGGTCAACAAAATCGTTTCTTGACCTGCCCAAAGCTGAGCAACAATTAAGACTAAAAGAGCGTTTAAAGAAATACTGCCAAAAGGCATATAAACGAGTACTTGACAAACCAGTTACTGAACTCCGTGAAGCTGGAATCTGCATGCGTGAAAATCCATTTTATGTTGACACTGTTCGCAGTTTCCGGGATAGGAGATATGAGTATAAAGGCCTCAACAAGGTTTGGAAAGGAAAACTATCAGATGCCAAGGCCAGTGGAAATTCTATGAAGATCCAGGAAGCACAAGACATGGTAGTGCTGTATGATTCATTGCAACTTGCTCACAAGTGTATTCTTAATTCCTTTTATGGATACGTAATGCGAAAGGGTGCAAGATGGTACTCCATGGAAATGGCTGGTGTTGTCACATATACTGGTGCTAAAATTATTCAGAATGCCCGTTTGCTGGTAGAGAAAATAGGAAAACCACTTGAACTAGACACTGACGGTATCTGGTGTTGCCTTCCTGGATCGTTTCCAGAAAATTTCACTTTTAAAACAATAGACTCAAAAAGGAAGCTGACAATCTCATACCCTTGTGTTATGCTTAATGTTGATGTGGCAATAAATAATACAAACGATCAGTACCAGACGCTCACAGATCCCAATAGGAAAACTTATACAACTCATAGTGAATGCTCTATTGAATTTGAGGTGGATGGACCATACAAGGCAATGATCATACCTGCTTCCAAGGAGGAAGGAATTTTAATTAAGAAGCGATACGCTGTTTTTAATGATGATGGAACTCTTGCAGAGCTCAAAGGTTTTGAGATCAAGCGCAGAGGTGAACTGAAGCTAATCAAAGTTTTCCAGGCTGAGCTTTTTGACAATTTTCTTCACGGCTCAACCTTAAAGGAATGCTATTCAGAAGTCGCTATAGTGGCAAATCGCTGGCTTGATCTTCTTGATACCCAAGGAAAAGATATTGCAGATAGCGAGTTGCTTGATTATATATCAGAATCAAGTACCATGAGCAAGTCTTTAGCTGAATATGGTCAGCAGAAGTCTTGTGCTGTTACCACTGCTAAACGTCTTGCTGATTTTCTCGGTGATACAATGGTCAAAGATAAAGGTCTTCGATGTCAATACATAGTAGCAAGTGAACCTAAGGGAACACCTGTAAGTGAGCGTGCTGTTCCTGTGGCAATATTTCAAACTGATGCTGAAGTAATGAAGTTCTATGTCCGAAAATGGTGCAAGGTCTCATCAGATGTTGGCATTCGCTCTATAATTGACTGGTCCTATTACAAGCAGCGGCTTAGTTCTGCAATTCAAAAAATTATCACTATTCCTGCTGCAATGCAAAAGGTTGCAAATCCCGTCCCTAGGGTTGTTCATCCTGATTGGTTGCATAAGAAGGTCCGTGAGAAGGAGGACAAGTTTCGCCAAAGAAAAATAGACGATACCTTTAAGTCAATGATCAAGAACGAGAGCTCAAAAAAACATAATGATTCTAAAGGTGTCCATAACATAATGGTTGATGAGAGTGTTAATGACTTGGAGGACTTTGGAAACAAGGGCAGGAGTTCTACAGGACCTAGACCAATTATACGGCATTATGAAGCTAACAATGAACAGCATTCAGAGAAGATCAATGGTCAAGAAGATTCAGAGCAACAAGCTGTTGACAGGAGTAACATACTTCATCCCCTTTCACAACAAAATGAAATATCATGTGAAGATATCGACAGAACTGTAGATTATCAAGGATGGCTTCAAATGAAAAAGAGAAAGTGGAAAAATATGCTGGGAATGAGAAAGAAGCAAAGATTGGAGAATTCAAAGAGATCTGACCATTTAAATGGCAGTCTTGAACAAACCAGTGGTAAGTTGAATCACGGAAAAAGTAATGTCAGTTCATATTTTAGAAGGCATGAGGTAGCCTTAACACGGTGCCCCTGGCAGATAATACAACTGGTCTACAGTACACAAGCTGGTCAATTTTTTGCTTGGGTTGTTGTTGACGGGATTATGCTCAAGATTCCTATTTCTATTCCTAGAGTCTTTTACCTTAACTCTAGATCACCAACAGAAGAATTTTCCGGCAAACGTGTCAACAAGACTCTTCCTCATGGAAGACATAGCTATAACCTGCATGAGGTCACAATTAATGAAGTACAATATAAAGAAGAAAGCAAAAAACTTGCCGCTCTTCTAGCAGATCCTGATGTTGAGGGAATATATGAAACCAAAGTGCCACTAGAGTTCAACGCTATAGTCCAACTTGGTTGTGTTTGTAAGGTGGATAAAACTGCTAAAAAACGTAGCCTACAAGAGCCATGGAATTTGAGTGAATTGCACATGAAGACCACAACAGAATGTGCTTATCTTGAACAATCAATACCTTTTTTTTACTTATACCACAGCATCTCAGAGGGACGGGCTATATATGTTGGATATTTTCCGGGGTCACAGGCAATAACTTTTGTGGTAGTTAATCCCTACCAAAACAAGGACATATCACCGATTTTTCTCGAAAGACAATTTCGCGATGCTTGCAGAGCTTTGTCTATTGAGCCAGCTCTGGGGAATGGCATTAATTTCAATGTGGAATATGTTGCACTTGTCAAGGATGCGGAAGCAGTATTGCAAAGCGCAATAAATGATCACAGGAGCGAACATCATGGGCCTATGGTTGCTGTCATTGAATGCCCTGATGTTCAACTATTAAAACAGGGCATTCGAGCTCTAGACGATTTCCCATGCCTGAGTATTCCTTCTAATGCACGTGATAGTCAGTATCAGATTCTCGGATGGCAACAAGTTGCTGCAAAACTTGGAATGCAACGATGTGCTGCATCAGTCCAGTGGCTCAATGAGAGAATTGCTTTATCAAGATATGCCCATGTACCACTGGGGAACTTTGCATTTGACTGGCTTATGTTTACAGTGGATACCTTCTTTTCTAGAGCACTGCGTGATAATCAACAGGTACTTTGGATATCTGATGATGGCTTTCCAGATTTGGGTGGCAACAATGGTGAAGAGAACTGTTTTTTAGACGAGGTGCAGCAACCTGTTTGTACGTTTCCTGGAGCTTATAGAAAAATTACCATAGAGCTAAAGATACACCACCTGGCTGTAGATGCCCTTTTAAAATGCAGCCAAGTTAATGATATGGAAGGAGGTGCTTTGTTAGGATTTGATCATGAATTTGATTCTGAATCATTTCCGATGAATGGCTTTGATGAGTCTACTTCATGCGCACATGCCTTTCGAGTACTAAAACATTTGATCCAGCGGTGCCTTGCAGATGCAGTCACATCTGGAAATGTTTATGCTGATGCAATATTGCAACATCTGTATAGATGGATTTGCAGCCCTCAATCAAAGCTTCATGATCCTGCTCTTCACCAGCTACTCCACAAGGTCATGCAAAAGGTCTTCGCATTATTGTTGGCAGAGTTCCGCAAGTTGGGCGCAACCATTGTATTTGCAAACTTTTCCAAGATTATTATAGACACGGGAAAATATGATTTGTCTACAGCCAAAGCATACTGTGATAGTTTGTTAAAAACTATACAATCTAGAGACCTATTCGAGTGGATTGAGCTTGAGCCACAGCAGTTCTGGTGCTCATTACTATTCATGGATCAGTATAACTACGGTGGAATACCAGCAAAATCCGATGAAGCTATGATTGATGGATCTCAAGTTGACATAATATCCAGTTGGAATATTGCTGAATACTTGCCGAAAAAAATCCAAGACCATTATGTGTTCATAGTTTCTCAATTCATGTATATTCCTTGGAATTATACACGAAAACAATCAGCGATCAGGGCTTCCGTGCAGAATGGAGACTCCTGCACCCCATCAATTAATATTGGGGCTGCAGAGGTTTTTGAGTCAGAAATAACTGAATATATTAAGGAGCAGATTAGCTCTTATTTCACTGACAAACTCCTTGGAGTTGTTCGTGATATTGTTCTTCATATGAAGGGGGCGGGTAGATCAGAAACCGACCAGAGTACATCAGCTGGCCTTCCACAGCTTATGGGTGATCAACCTAGGGGGGATGCAGCCTTGGAGTTTATCAAGAATGTCTGTGCTGTCCTTGCCCTCGACCAAAGTGTGCAGCATGATGTTTATGTCATGAGGAAAAATTTGTTAAAATTTGTTCGCGTCAGAGAGTTTGCTCCAGAAGCAGAATTCCACGATCCTTGTCAGTCCTTCATATTACCCAATGTCATCTGCAGCTATTGTAATGACTGCAGAGATTTGGACTTGTGCCGTGATCCGACTTTATTGACCGAAGAGTGGCATTGTGCCGTACCCCAGTGTGGCCAGCCTTATGACCGTGAGGAGATGGAGAAGGCTCTTCTTTTGATTGCACGACAAAGAGAGCGGAAATACCACGAGCAAGATCTGGTGTGTCTCAGGTGCAACGAGGTGAAAGCCGCACATTTGGCTGAGCAATGTACATGTGCAGGCTCATATAAATGCAAAGAAGATGCAGCTGAATTTCGCAAAAAGATGCTTGTTATCTTCAACATAGCTTCTCGACAGAAATTCCAACTTCTTGAAGAATGTACCGCCTGGTTGTTAAGACTTAAAATTTAA 6615 0.4106 MSGRKWDRRDNRTSKKQKLIKSAEEELEAKLGFDLFSEGEKRLGWLLTFSTSSYEDEDTRKAYSCVDLYFVTQDGSSFKTKYRFRPYFYVATKNKMEMDVDAYLRRRYEGQIADIKIVEKEDLDLKNHLSGLRKSYLKISFDTVQQLMNVKSDLMHVVERNKAKSDAAEAYESILSGRREQKLQDFLDCIIDLREYDVPYHVRFAIDNDIRCGLWYDVGVSTDGVTLQRRTDLLQRAEVRVCAFDIETTKLPLKFPDADYDSVMMISYMVDRQGYLIINRECVGDDIEDLEFTPKPEFEGCFKVTNVQNEIELLRTWFSHMQEVKPGIYVTYNGDFFDWPFLERRAAHHGLKISDELGFQCDMNQGECRAKFAPHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPEEVNPEDMVRFAKEKPQMMASYSVSDAVSTYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQSYEANVICPNKHQSDPEKFYKNHLLESETYIGGHVECLESGVFRSDIPCSFTLEPSAFEQLIKNLDRDLQYAIRVEGKMDLESVSNYDEVKDAIMEKLVKLRDAPIRDECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEICTACDFNRPGKTCLRKLEWVWRGETFTAKKSDYYHLKKQIESEFVDGVNERSTKSFLDLPKAEQQLRLKERLKKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSDAKASGNSMKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCCLPGSFPENFTFKTIDSKRKLTISYPCVMLNVDVAINNTNDQYQTLTDPNRKTYTTHSECSIEFEVDGPYKAMIIPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDNFLHGSTLKECYSEVAIVANRWLDLLDTQGKDIADSELLDYISESSTMSKSLAEYGQQKSCAVTTAKRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAVPVAIFQTDAEVMKFYVRKWCKVSSDVGIRSIIDWSYYKQRLSSAIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKEDKFRQRKIDDTFKSMIKNESSKKHNDSKGVHNIMVDESVNDLEDFGNKGRSSTGPRPIIRHYEANNEQHSEKINGQEDSEQQAVDRSNILHPLSQQNEISCEDIDRTVDYQGWLQMKKRKWKNMLGMRKKQRLENSKRSDHLNGSLEQTSGKLNHGKSNVSSYFRRHEVALTRCPWQIIQLVYSTQAGQFFAWVVVDGIMLKIPISIPRVFYLNSRSPTEEFSGKRVNKTLPHGRHSYNLHEVTINEVQYKEESKKLAALLADPDVEGIYETKVPLEFNAIVQLGCVCKVDKTAKKRSLQEPWNLSELHMKTTTECAYLEQSIPFFYLYHSISEGRAIYVGYFPGSQAITFVVVNPYQNKDISPIFLERQFRDACRALSIEPALGNGINFNVEYVALVKDAEAVLQSAINDHRSEHHGPMVAVIECPDVQLLKQGIRALDDFPCLSIPSNARDSQYQILGWQQVAAKLGMQRCAASVQWLNERIALSRYAHVPLGNFAFDWLMFTVDTFFSRALRDNQQVLWISDDGFPDLGGNNGEENCFLDEVQQPVCTFPGAYRKITIELKIHHLAVDALLKCSQVNDMEGGALLGFDHEFDSESFPMNGFDESTSCAHAFRVLKHLIQRCLADAVTSGNVYADAILQHLYRWICSPQSKLHDPALHQLLHKVMQKVFALLLAEFRKLGATIVFANFSKIIIDTGKYDLSTAKAYCDSLLKTIQSRDLFEWIELEPQQFWCSLLFMDQYNYGGIPAKSDEAMIDGSQVDIISSWNIAEYLPKKIQDHYVFIVSQFMYIPWNYTRKQSAIRASVQNGDSCTPSINIGAAEVFESEITEYIKEQISSYFTDKLLGVVRDIVLHMKGAGRSETDQSTSAGLPQLMGDQPRGDAALEFIKNVCAVLALDQSVQHDVYVMRKNLLKFVRVREFAPEAEFHDPCQSFILPNVICSYCNDCRDLDLCRDPTLLTEEWHCAVPQCGQPYDREEMEKALLLIARQRERKYHEQDLVCLRCNEVKAAHLAEQCTCAGSYKCKEDAAEFRKKMLVIFNIASRQKFQLLEECTAWLLRLKI 2204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi691g00004 2204 FunFam DNA polymerase epsilon catalytic subunit 751 935 - -
Vivi691g00004 2204 SUPERFAMILY Ribonuclease H-like 56 465 IPR012337 -
Vivi691g00004 2204 SMART DUF1744_2 1508 1889 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Vivi691g00004 2204 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 14 2201 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Vivi691g00004 2204 CDD DNA_polB_epsilon_exo 238 441 - -
Vivi691g00004 2204 CDD POLBc_epsilon 501 1120 - -
Vivi691g00004 2204 Pfam DNA polymerase family B, exonuclease domain 72 398 IPR006133 -
Vivi691g00004 2204 MobiDBLite consensus disorder prediction 1206 1221 - -
Vivi691g00004 2204 MobiDBLite consensus disorder prediction 1269 1299 - -
Vivi691g00004 2204 Pfam DNA polymerase family B 754 1068 IPR006134 GO:0000166|GO:0003677
Vivi691g00004 2204 Gene3D - 939 1123 IPR042087 -
Vivi691g00004 2204 SMART polmehr3 237 840 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vivi691g00004 2204 FunFam DNA polymerase epsilon catalytic subunit 238 466 - -
Vivi691g00004 2204 FunFam DNA polymerase epsilon catalytic subunit 939 1123 - -
Vivi691g00004 2204 Coils Coil 1201 1221 - -
Vivi691g00004 2204 Pfam Domain of unknown function (DUF1744) 1528 1889 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Vivi691g00004 2204 SUPERFAMILY DNA/RNA polymerases 484 1113 IPR043502 -
Vivi691g00004 2204 MobiDBLite consensus disorder prediction 1284 1299 - -
Vivi691g00004 2204 Gene3D DNA Polymerase, chain B, domain 1 49 223 - -
Vivi691g00004 2204 MobiDBLite consensus disorder prediction 1269 1283 - -
Vivi691g00004 2204 Gene3D Palm domain of DNA polymerase 753 935 IPR023211 -
Vivi691g00004 2204 Gene3D - 236 466 IPR036397 GO:0003676
Vivi691g00004 2204 MobiDBLite consensus disorder prediction 1206 1225 - -
Vivi691g00004 2204 FunFam DNA polymerase epsilon catalytic subunit 54 225 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi691g00004 1 2200 Core DNA Replication Machinery Family AT2G27120 67.664 0.0 3033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi691g00004 K02324 - gmx:100812003 3751.44