Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi691g00003 ATGAGTGGCCGGAAATGGGACCGGAGAGACAACCGAACATCAAAGAAGCAGAAATTGATCAAGAGCGCCGAGGAAGAACTTGAAGCAAAGCTAGGGTTCGATCTTTTCTCCGAAGGGGAAAAGCGTCTTGGATGGTTGCTCACTTTTTCAACGTCATCTTATGAAGACGAGGATACCCGCAAAGCCTACAGTTGCGTTGATCTTTACTTTGTCACACAGGACGGGTCTTCATTCAAGACAAAATACAGATTTCGTCCTTATTTCTATGTAGCTACAAAGAATAAAATGGAGATGGATGTTGACGCATACCTGAGACGACGTTATGAAGGCCAGATTGCAGATATCAAAATCGTAGAAAAGGAAGATCTGGATCTTAAAAACCATTTGTCTGGATTAAGAAAATCTTATCTAAAGATTTCATTTGATACCGTGCAACAACTGATGAATGTGAAGAGTGACCTGATGCATGTTGTTGAAAGAAATAAGGCGAAGTCTGATGCTGCAGAAGCCTATGAGTCCATATTATCGGGGAGAAGCAGAGAACAAAAACTTCAAGATTTTCTAGATTGCATAATTGATCTTCGTGAATATGACGTTCCTTACCATGTTCGCTTTGCTATTGACAATGATATACGGTGTGGCCTGTGGTATGATGTTGGCGTGTCCACTGATGGGGTTACACTTCAAAGAAGGACAGATCTTCTACAGCGTGCTGAAGTTCGTGTTTGTGCATTTGATATCGAGACTACAAAACTTCCTTTGAAGTTTCCTGATGCTGACTATGATTCAGTTATGATGATTTCATATATGGTAGATAGGCAAGGGTATTTAATCATAAATAGAGAGTGTGTTGGGGACGATATAGAGGATTTAGAGTTCACTCCAAAACCAGAGTTTGAAGGGTGTTTCAAGGTGACAAATGTTCAAAATGAGATTGAGCTTCTTAGAACATGGTTTTCTCATATGCAAGAGGTGAAACCTGGTATCTATGTGACATATAATGGTGATTTCTTTGACTGGCCATTCCTGGAACGACGGGCAGCCCATCACGGGTTAAAAATAAGTGATGAACTGGGGTTTCAATGTGACATGAACCAAGGGGAATGTCGTGCTAAATTTGCTCCCCATTTAGATTGCTTTGCGTGGGTTAAACGTGACAGTTATCTTCCTCAAGGGAGCCAAGGCCTCAAGGCTGTAACAAAAGCCAAGCTGGGATATGATCCAGAGGAGGTGAACCCTGAGGACATGGTACGCTTTGCAAAGGAAAAGCCTCAGATGATGGCCTCCTATTCTGTTTCTGATGCAGTGTCAACATATTACCTATATACAACTTATGTTCATCCCTTTATTTTCTCGCTTGCCACTATCATTCCCATGTCACCAGATGAGGTTTTGCGCAAAGGCAGTGGGACCCTCTGTGAAATGTTGCTTATGGTCCAGTCATACGAGGCTAATGTTATCTGCCCTAACAAGCACCAATCTGATCCGGAGAAGTTTTATAAGAATCATCTTCTTGAGAGTGAGACGTATATAGGTGGCCATGTTGAATGCCTAGAAAGTGGTGTATTTAGATCTGATATTCCATGTAGTTTTACACTCGAGCCATCTGCCTTTGAGCAATTGATCAAAAACCTTGACCGAGATCTACAGTATGCTATAAGAGTTGAGGGTAAGATGGATTTAGAATCTGTATCAAATTATGATGAAGTGAAGGATGCTATCATGGAAAAGCTTGTAAAATTACGAGATGCACCAATACGTGATGAATGCCCCCTCATTTATCATTTGGATGTAGCTGCAATGTATCCAAACATAATTTTAACAAACCGACTTCAGCCTCCATCAATTGTTACGGACGAGATTTGCACTGCATGTGACTTTAACCGTCCCGGAAAGACTTGTCTACGCAAGCTTGAATGGGTTTGGCGTGGAGAAACATTCACGGCAAAGAAAAGTGACTATTATCATCTAAAGAAGCAAATTGAGTCAGAGTTTGTCGATGGAGTAAATGAAAGGTCAACAAAATCGTTTCTTGACCTGCCCAAAGCTGAGCAACAATTAAGACTAAAAGAGCGTTTAAAGAAATACTGCCAAAAGGCATATAAACGAGTACTTGACAAACCAGTTACTGAACTCCGTGAAGCTGGAATCTGCATGCGTGAAAATCCATTTTATGTTGACACTGTTCGCAGTTTCCGGGATAGGAGATATGAGTATAAAGGCCTCAACAAGGTTTGGAAAGGAAAACTATCAGATGCCAAGGCCAGTGGAAATTCTATGAAGATCCAGGAAGCACAAGACATGGTAGTGCTGTATGATTCATTGCAACTTGCTCACAAGTGTATTCTTAATTCCTTTTATGGATACGTAATGCGAAAGGGTGCAAGATGGTACTCCATGGAAATGGCTGGTGTTGTCACATATACTGGTGCTAAAATTATTCAGAATGCCCGTTTGCTGGTAGAGAAAATAGGAAAACCACTTGAACTAGACACTGACGGTATCTGGTGTTGCCTTCCTGGATCGTTTCCAGAAAATTTCACTTTTAAAACAATAGACTCAAAAAGGAAGCTGACAATCTCATACCCTTGTGTTATGCTTAATGTTGATGTGGCAATAAATAATACAAACGATCAGTACCAGACGCTCACAGATCCCAATAGGAAAACTTATACAACTCATAGTGAATGCTCTATTGAATTTGAGGTGGATGGACCATACAAGGCAATGATCATACCTGCTTCCAAGGAGGAAGGAATTTTAATTAAGAAGCGATACGCTGTTTTTAATGATGATGGAACTCTTGCAGAGCTCAAAGGTTTTGAGATCAAGCGCAGAGGTGAACTGAAGCTAATCAAAGTTTTCCAGGCTGAGCTTTTTGACAATTTTCTTCACGGCTCAACCTTAAAGGAATGCTATTCAGAAGTCGCTATAGTGGCAAATCGCTGGCTTGATCTTCTTGATACCCAAGGAAAAGATATTGCAGATAGCGAGTTGCTTGATTATATATCAGAATCAAGTACCATGAGCAAGTCTTTAGCTGAATATGGTCAGCAGAAGTCTTGTGCTGTTACCACTGCTAAACGTCTTGCTGATTTTCTCGGTGATACAATGGTCAAAGATAAAGGTCTTCGATGTCAATACATAGTAGCAAGTGAACCTAAGGGAACACCTGTAAGTGAGCGTGCTGTTCCTGTGGCAATATTTCAAACTGATGCTGAAGTAATGAAGTTCTATGTCCGAAAATGGTGCAAGGTCTCATCAGATGTTGGCATTCGCTCTATAATTGACTGGTCCTATTACAAGCAGCGGCTTAGTTCTGCAATTCAAAAAATTATCACTATTCCTGCTGCAATGCAAAAGGTTGCAAATCCCGTCCCTAGGGTTGTTCATCCTGATTGGTTGCATAAGAAGGTCCGTGAGAAGGAGGACAAGTTTCGCCAAAGAAAAATAGACGATACCTTTAAGTCAATGATCAAGAACGAGAGCTCAAAAAAACATAATGATTCTAAAGGTGTCCATAACATAATGGTTGATGAGAGTGTTAATGACTTGGAGGACTTTGGAAACAAGGGCAGGAGTTCTACAGGACCTAGACCAATTATACGGCATTATGAAGCTAACAATGAACAGCATTCAGAGAAGATCAATGGTCAAGAAGATTCAGAGCAACAAGCTGTTGACAGGAGTAACATACTTCATCCCCTTTCACAACAAAATGAAATATCATGTGAAGATATCGACAGAACTGTAGATTATCAAGGATGGCTTCAAATGAAAAAGAGAAAGTGGAAAAATATGCTGGGAATGAGAAAGAAGCAAAGATTGGAGAATTCAAAGAGATCTGACCATTTAAATGGCAGTCTTGAACAAACCAGTGGTAAGTTGAATCACGGAAAAAGTAATGTCAGTTCATATTTTAGAAGGCATGAGGTAGCCTTAACACGGTGCCCCTGGCAGATAATACAACTGGTCTACAGTACACAAGCTGGTCAATTTTTTGCTTGGGTTGTTGTTGACGGGATTATGCTCAAGATTCCTATTTCTATTCCTAGAGTCTTTTACCTTAACTCTAGATCACCAACAGAAGAATTTTCCGGCAAACGTGTCAACAAGACTCTTCCTCATGGAAGACATAGCTATAACCTGCATGAGGTCACAATTAATGAAGTACAATATAAAGAAGAAAGCAAAAAACTTGCCGCTCTTCTAGCAGATCCTGATGTTGAGGGAATATATGAAACCAAAGTGCCACTAGAGTTCAACGCTATAGTCCAACTTGGTTGTGTTTGTAAGGTGGATAAAACTGCTAAAAAACGTAGCCTACAAGAGCCATGGAATTTGAGTGAATTGCACATGAAGACCACAACAGAATGTGCTTATCTTGAACAATCAATACCTTTTTTTTACTTATACCACAGCATCTCAGAGGGACGGGCTATATATGTTGGATATTTTCCGGGGTCACAGGCAATAACTTTTGTGGTAGTTAATCCCTACCAAAACAAGGACATATCACCGATTTTTCTCGAAAGACAATTTCGCGATGCTTGCAGAGCTTTGTCTATTGAGCCAGCTCTGGGGAATGGCATTAATTTCAATGTGGAATATGTTGCACTTGTCAAGGATGCGGAAGCAGTATTGCAAAGCGCAATAAATGATCACAGGAGCGAACATCATGGGCCTATGGTTGCTGTCATTGAATGCCCTGATGTTCAACTATTAAAACAGGGCATTCGAGCTCTAGACGATTTCCCATGCCTGAGTATTCCTTCTAATGCACGTGATAGTCAGTATCAGATTCTCGGATGGCAACAAGTTGCTGCAAAACTTGGAATGCAACGATGTGCTGCATCAGTCCAGTGGCTCAATGAGAGAATTGCTTTATCAAGATATGCCCATGTACCACTGGGGAACTTTGCATTTGACTGGCTTATGTTTACAGTGGATACCTTCTTTTCTAGAGCACTGCGTGATAATCAACAGGTACTTTGGATATCTGATGATGGCTTTCCAGATTTGGGTGGCAACAATGGTGAAGAGAACTGTTTTTTAGACGAGGTGCAGCAACCTGTTTGTACGTTTCCTGGAGCTTATAGAAAAATTACCATAGAGCTAAAGATACACCACCTGGCTGTAGATGCCCTTTTAAAATGCAGCCAAGTTAATGATATGGAAGGAGGTGCTTTGTTAGGATTTGATCATGAATTTGATTCTGAATCATTTCCGATGAATGGCTTTGATGAGTCTACTTCATGCGCACATGCCTTTCGAGTACTAAAACATTTGATCCAGCGGTGCCTTGCAGATGCAGTCACATCTGGAAATGTTTATGCTGATGCAATATTGCAACATCTGTATAGATGGATTTGCAGCCCTCAATCAAAGCTTCATGATCCTGCTCTTCACCAGCTACTCCACAAGGTCATGCAAAAGGTCTTCGCATTATTGTTGGCAGAGTTCCGCAAGTTGGGCGCAACCATTGTATTTGCAAACTTTTCCAAGATTATTATAGACACGGGAAAATATGATTTGTCTACAGCCAAAGCATACTGTGATAGTTTGTTAAAAACTATACAATCTAGAGACCTATTCGAGTGGATTGAGCTTGAGCCACAGCAGTTCTGGTGCTCATTACTATTCATGGATCAGTATAACTACGGTGGAATACCAGCAAAATCCGATGAAGCTATGATTGATGGATCTCAAGTTGACATAATATCCAGTTGGAATATTGCTGAATACTTGCCGAAAAAAATCCAAGACCATTATGTGTTCATAGTTTCTCAATTCATGTATATTCCTTGGAATTATACACGAAAACAATCAGCGATCAGGGCTTCCGTGCAGAATGGAGACTCCTGCACCCCATCAATTAATATTGGGGCTGCAGAGGTTTTTGAGTCAGAAATAACTGAATATATTAAGGAGCAGATTAGCTCTTATTTCACTGACAAACTCCTTGGAGTTGTTCGTGATATTGTTCTTCATATGAAGGGGGCGGGTAGATCAGAAACCGACCAGAGTACATCAGCTGGCCTTCCACAGCTTATGGGTGATCAACCTAGGGGGGATGCAGCCTTGGAGTTTATCAAGAATGTCTGTGCTGTCCTTGCCCTCGACCAAAGTGTGCAGCATGATGTTTATGTCATGAGGAAAAATTTGTTAAAATTTGTTCGCGTCAGAGAGTTTGCTCCAGAAGCAGAATTCCACGATCCTTGTCAGTCCTTCATATTACCCAATGTCATCTGCAGCTATTGTAATGACTGCAGAGATTTGGACTTGTGCCGTGATCCGACTTTATTGACCGAAGAGTGGCATTGTGCCGTACCCCAGTGTGGCCAGCCTTATGACCGTGAGGAGATGGAGAAGGCTCTTCTTTTGATTGCACGACAAAGAGAGCGGAAATACCACGAGCAAGATCTGGTGTGTCTCAGGTGCAACGAGGTGAAAGCCGCACATTTGGCTGAGCAATGTACATGTGCAGGCTCATATAAATGCAAAGAAGATGCAGCTGAATTTCGCAAAAAGATGCTTGTTATCTTCAACATAGCTTCTCGACAGAAATTCCAACTTCTTGAAGAATGTACCGCCTGGTTGTTAAGACTTAAAATTTAA 6618 0.4107 MSGRKWDRRDNRTSKKQKLIKSAEEELEAKLGFDLFSEGEKRLGWLLTFSTSSYEDEDTRKAYSCVDLYFVTQDGSSFKTKYRFRPYFYVATKNKMEMDVDAYLRRRYEGQIADIKIVEKEDLDLKNHLSGLRKSYLKISFDTVQQLMNVKSDLMHVVERNKAKSDAAEAYESILSGRSREQKLQDFLDCIIDLREYDVPYHVRFAIDNDIRCGLWYDVGVSTDGVTLQRRTDLLQRAEVRVCAFDIETTKLPLKFPDADYDSVMMISYMVDRQGYLIINRECVGDDIEDLEFTPKPEFEGCFKVTNVQNEIELLRTWFSHMQEVKPGIYVTYNGDFFDWPFLERRAAHHGLKISDELGFQCDMNQGECRAKFAPHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPEEVNPEDMVRFAKEKPQMMASYSVSDAVSTYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQSYEANVICPNKHQSDPEKFYKNHLLESETYIGGHVECLESGVFRSDIPCSFTLEPSAFEQLIKNLDRDLQYAIRVEGKMDLESVSNYDEVKDAIMEKLVKLRDAPIRDECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEICTACDFNRPGKTCLRKLEWVWRGETFTAKKSDYYHLKKQIESEFVDGVNERSTKSFLDLPKAEQQLRLKERLKKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSDAKASGNSMKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCCLPGSFPENFTFKTIDSKRKLTISYPCVMLNVDVAINNTNDQYQTLTDPNRKTYTTHSECSIEFEVDGPYKAMIIPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDNFLHGSTLKECYSEVAIVANRWLDLLDTQGKDIADSELLDYISESSTMSKSLAEYGQQKSCAVTTAKRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAVPVAIFQTDAEVMKFYVRKWCKVSSDVGIRSIIDWSYYKQRLSSAIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKEDKFRQRKIDDTFKSMIKNESSKKHNDSKGVHNIMVDESVNDLEDFGNKGRSSTGPRPIIRHYEANNEQHSEKINGQEDSEQQAVDRSNILHPLSQQNEISCEDIDRTVDYQGWLQMKKRKWKNMLGMRKKQRLENSKRSDHLNGSLEQTSGKLNHGKSNVSSYFRRHEVALTRCPWQIIQLVYSTQAGQFFAWVVVDGIMLKIPISIPRVFYLNSRSPTEEFSGKRVNKTLPHGRHSYNLHEVTINEVQYKEESKKLAALLADPDVEGIYETKVPLEFNAIVQLGCVCKVDKTAKKRSLQEPWNLSELHMKTTTECAYLEQSIPFFYLYHSISEGRAIYVGYFPGSQAITFVVVNPYQNKDISPIFLERQFRDACRALSIEPALGNGINFNVEYVALVKDAEAVLQSAINDHRSEHHGPMVAVIECPDVQLLKQGIRALDDFPCLSIPSNARDSQYQILGWQQVAAKLGMQRCAASVQWLNERIALSRYAHVPLGNFAFDWLMFTVDTFFSRALRDNQQVLWISDDGFPDLGGNNGEENCFLDEVQQPVCTFPGAYRKITIELKIHHLAVDALLKCSQVNDMEGGALLGFDHEFDSESFPMNGFDESTSCAHAFRVLKHLIQRCLADAVTSGNVYADAILQHLYRWICSPQSKLHDPALHQLLHKVMQKVFALLLAEFRKLGATIVFANFSKIIIDTGKYDLSTAKAYCDSLLKTIQSRDLFEWIELEPQQFWCSLLFMDQYNYGGIPAKSDEAMIDGSQVDIISSWNIAEYLPKKIQDHYVFIVSQFMYIPWNYTRKQSAIRASVQNGDSCTPSINIGAAEVFESEITEYIKEQISSYFTDKLLGVVRDIVLHMKGAGRSETDQSTSAGLPQLMGDQPRGDAALEFIKNVCAVLALDQSVQHDVYVMRKNLLKFVRVREFAPEAEFHDPCQSFILPNVICSYCNDCRDLDLCRDPTLLTEEWHCAVPQCGQPYDREEMEKALLLIARQRERKYHEQDLVCLRCNEVKAAHLAEQCTCAGSYKCKEDAAEFRKKMLVIFNIASRQKFQLLEECTAWLLRLKI 2205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi691g00003 2205 SMART DUF1744_2 1509 1890 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Vivi691g00003 2205 FunFam DNA polymerase epsilon catalytic subunit 940 1124 - -
Vivi691g00003 2205 MobiDBLite consensus disorder prediction 1270 1300 - -
Vivi691g00003 2205 Gene3D - 237 467 IPR036397 GO:0003676
Vivi691g00003 2205 SUPERFAMILY DNA/RNA polymerases 485 1114 IPR043502 -
Vivi691g00003 2205 MobiDBLite consensus disorder prediction 1207 1226 - -
Vivi691g00003 2205 Coils Coil 1202 1222 - -
Vivi691g00003 2205 Pfam DNA polymerase family B 755 1069 IPR006134 GO:0000166|GO:0003677
Vivi691g00003 2205 SUPERFAMILY Ribonuclease H-like 56 466 IPR012337 -
Vivi691g00003 2205 Gene3D Palm domain of DNA polymerase 754 936 IPR023211 -
Vivi691g00003 2205 FunFam DNA polymerase epsilon catalytic subunit 54 226 - -
Vivi691g00003 2205 Pfam Domain of unknown function (DUF1744) 1529 1890 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Vivi691g00003 2205 MobiDBLite consensus disorder prediction 1285 1300 - -
Vivi691g00003 2205 FunFam DNA polymerase epsilon catalytic subunit 752 936 - -
Vivi691g00003 2205 MobiDBLite consensus disorder prediction 1207 1222 - -
Vivi691g00003 2205 MobiDBLite consensus disorder prediction 1270 1284 - -
Vivi691g00003 2205 Gene3D - 940 1124 IPR042087 -
Vivi691g00003 2205 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 14 2202 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Vivi691g00003 2205 FunFam DNA polymerase epsilon catalytic subunit 239 467 - -
Vivi691g00003 2205 SMART polmehr3 238 841 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vivi691g00003 2205 Gene3D DNA Polymerase, chain B, domain 1 49 224 - -
Vivi691g00003 2205 CDD DNA_polB_epsilon_exo 239 442 - -
Vivi691g00003 2205 CDD POLBc_epsilon 502 1121 - -
Vivi691g00003 2205 Pfam DNA polymerase family B, exonuclease domain 72 399 IPR006133 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi691g00003 1 2201 Core DNA Replication Machinery Family AT2G27120 67.634 0.0 3029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi691g00003 K02324 - gmx:100812003 3746.82