Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi690g00001 ATGGTAAAAACAAATGTGGAGAAACCTGCGGCGGAACGAAGTGATTCATTGTTCCGAGGAGTGAGGAAGAGGAAGTGGGGAAAATATGTGTCGGAAATTAGATTACCAAACAGCCGTCAAAGAATATGGTTAGGCTCTTATGACTCCGCAGAAAAAGCGGCGCGTGCATTTGACGCCGCTACGTACTGCTTACGTGGCAGTGGTGCCAAGTTCAATTTTCCAAATAATCCACCGCATATTGCCGGAGGAAGTTCCATGACCCATTCTGAGATTCAAGCAGCCGCCGCCCGTTTTGCGAATTCCGAGCCGTATAATGAATATTTGGGTCAACCGGATAATACTCCAGATGAAACACCATCTTCGTCGGTGGGGACACCAACCACACCATTGTTGCCTATGGAGTTGCCATCTCCTGCTCTTTCTGATGCAACGGTTCAAACAGAGAGTGACTTAACAGACAACGAATTGTTTAGGGATATAACGAATAACGAGTTGTTTAGAGATTTGTTTTCAGACACCGGATCGGGATACACTATGTTTCCGGGGTTTGATGATTTTTGTGGCGATTTCTATGTGCCGGAGTTTACAAATTTTGATTATGAACAAGAGAACATGGACGAGTTGATAATTCACGATTCCTTTTTGTGGAGTTTCTAA 657 0.4444 MVKTNVEKPAAERSDSLFRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSAEKAARAFDAATYCLRGSGAKFNFPNNPPHIAGGSSMTHSEIQAAAARFANSEPYNEYLGQPDNTPDETPSSSVGTPTTPLLPMELPSPALSDATVQTESDLTDNELFRDITNNELFRDLFSDTGSGYTMFPGFDDFCGDFYVPEFTNFDYEQENMDELIIHDSFLWSF 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi690g00001 218 MobiDBLite consensus disorder prediction 104 132 - -
Vivi690g00001 218 Pfam AP2 domain 18 66 IPR001471 GO:0003700|GO:0006355
Vivi690g00001 218 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Vivi690g00001 218 MobiDBLite consensus disorder prediction 106 128 - -
Vivi690g00001 218 CDD AP2 16 76 IPR001471 GO:0003700|GO:0006355
Vivi690g00001 218 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700|GO:0006355
Vivi690g00001 218 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Vivi690g00001 218 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 121 - -
Vivi690g00001 218 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Vivi690g00001 218 FunFam Ethylene-responsive transcription factor 2 16 75 - -
Vivi690g00001 218 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Vivi690g00001 218 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi690g00001 16 218 AP2-EREBP Transcription Factor Family AT1G19210 42.788 2.97e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi690g00001 AP2 5.5e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi690g00001 - - mtr:11441685 297.36