Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi68g00030 ATGTATCTTTCAAAGGTTTGCATCTTATGGTTCTGCTGTTGTTTCATACCGGCTGCTGCTCAACTTATCAATGTCACAGACCCTACTGAAGTGCTAGCATTGAGGAGCATACATGAAAGTTTGATTGATCCAGATGGACATTTGAGCAATTGGATTGATGATGATCCATGCCTATCTAACTGGACAGGAGTTGTGTGCTCTAATGAAACAATAGAGGAAAACTTTCTACATGTTGTAGAATTGGAACTATTGAGATTGAACTTGTCTGGAACTTTGGCACCAGATATTGGCAACTTGGCTTATTTGAAAATATTGAATTTCATGTGGAACAACATAAGTGGGACAATTCCAGTTGAAATAGGCAATATCACATCTTTGGAACTTTTGTTCCTAAGTGGAAATGAATTAACAGGAGCAGTGCCAGAGCAACTTGGCTTTCTATCAAATCTACGTATTATGCAAATTGATGAAAACAAATTATCAGGACCTATACCTTTATCATTTGCAAATTTGAACAAAACAAAACACTTTCACATGAACAATAACTCACTTAGTGGACAAATCCCACCAGAACTTTCCAAATTATCAGGCCTTATTCACCTGCTTTTGGACAACAATAATTTATCAGGAATTCTTCCACCTGAGCTATCTGATACGCCAAACTTGAGTATACTACAACTTGACAACAATAACTTTGGAGGAAATAGCATTCCAGATTCTTACGTCAACATGTCAAAATTGGTCAAATTGAGCCTTAGGAATTGCAACTTGCGAGGACCAATTCCTGATTTAAGCTTGATACCTAACCTTCTTTATATTGACCTTAGCTCCAATCAGTTGAATGGATCAATTCCTCCTAATCAGCTTGCTGAAAATATCACAACTGTTATTTTATCAAACAACAATCTTACCGGAACTATTCCAGCCTATTTTTCTGATCTTCCACGACTCCAGAAATTGTCGCTTGCAAACAATTTATTGAGTGGAAGTGTTCCCTCCAGCATTTGGCAGAACAAGATTTCAAATGCTGATCAAAGATTGCTACTAGAGTTGCAAAACAATCAGTTTAGAAACATATCAGGCAGTACTAATCTTCCTCCAAATGTCACACTCTTGCTTGACGGGAATCCCCTATGCTCAGCTAACACTCTGAATCAGTTCTGTAAACTAGAAGGAGCTGGTAGTGAAACAAATGGCACATCTCCAAGAAACTCCAGCAACCCTTGTCCAAATCAAAGATGTCCACCTCCTTATGAATTCTATGTGAACTGTTTCTGTGTTGCTCCATTGATTATTGGTTATCGACTGAGAAGTCCTGGATTTTCAGATTTTCCTCCATATTTCACTACATTTGAGGAATATTTGACTTCTAATCTTAAGCTACATGCCAATCAACTAAGCTATACTTTTGAGTGGCAAGTAGGACCACGGGTGCTAATGATCTTGAAGCTTTTTCCTGAATATGTTGATAACAATAGTTCTCGCACTTTCAATTCAAGTGAGATCCAACGGATCCGAAACATGTTCACGGGTTGGGTCATTCCTAACCGTGATTTGTTTGGGCCTTATGACCTGATGGACCTGGTTCCTTATAATAACGGGACAGAGACCTCTTCCAATTCAGGCATAAGCACGGGTGCTTTGGTTGGCATAATCTTAGGCTCAATTGCGTGTGTAATTTCGTTGTCTGCAATTATTATTCTTTTACTATTAAGAATACGATTAAGACGTCATGATGCAGTTTCCAAACCACGTCATTCATCTAAGATCGCAATACAAATTGATGGTACAAGAGCCTTTACTTATGAGGAGTTGTCCGCTGCTACAAACAATTTTGACAGTAATGCTCAAATTGGACAAGGAGGTTATGGGAAGGTTTATAAAGGTATTCTTTCTAATGGCACTGTGGTTGCCATAAAACGTGCACAGCAAGGATCACTGCAAGGTGAGAAGGAATTTCTCACAGAAATAAGAATACTATCAAGGATACATCATCGCAACCTCGTGTCTCTGATTGGATATTGTGATGAAGAAGGGGAACAGATGCTGGTTTATGAATTTATGTCCAATGGCACTCTAAGGGACCACCTTTCTGGTACATCATTTACATCAGAAAAACCTTTGACTTTTGCTATGAGATTGAAGATAGCACTCGAGTCAGCTAAAGGTCTCATGTATCTACACACAGAAGCTGATCCTCCAATATTTCACCGAGATGTGAAGTCAAGCAACATATTATTAGACACTAAGTTTACTGCAAAAGTTGCAGACTTTGGACTTTCACGTCTTGCCCCAGTTTCAGATGTTCAAGGCGTTGTACCTGGTCATGTATCCACTGTGGTAAAGGGCACGCCGGGGTACCTTGATCCAGAGTACTTCTTAACTCACACATTGACCGACAAAAGTGATGTTTACAGTCTTGGTGTTGTGTTTCTAGAACTTTTGACTGGGATGCATCCCATTGCACATGGGAAAAATATTGTCAGAGAGGTTAGTCTTGCTTTTGAATCGGGTGAGATATCTTCAGTTATTGATAAACACATGGGGTCTTATCCATCTGAGCATGCAGAAAAGTTTTTAAATTTGGCTCTGAAGTGTTCTGAAGATGAGCCCGAGCCACGTCCTAAAATGGCCCAAGTGGTTAGAATACTTGAAAACATGTGTTCTGTGATGACAGATTCAGATACAACAAGAGATACATCTACAAGCAGTGATTCTCGCAAAACAGTCAGCTTTCTAGGCACACCTTCTTCATCTTCAACCATAAACACTCCGTTTGTATTAAGAACTGTATAA 2796 0.392 MYLSKVCILWFCCCFIPAAAQLINVTDPTEVLALRSIHESLIDPDGHLSNWIDDDPCLSNWTGVVCSNETIEENFLHVVELELLRLNLSGTLAPDIGNLAYLKILNFMWNNISGTIPVEIGNITSLELLFLSGNELTGAVPEQLGFLSNLRIMQIDENKLSGPIPLSFANLNKTKHFHMNNNSLSGQIPPELSKLSGLIHLLLDNNNLSGILPPELSDTPNLSILQLDNNNFGGNSIPDSYVNMSKLVKLSLRNCNLRGPIPDLSLIPNLLYIDLSSNQLNGSIPPNQLAENITTVILSNNNLTGTIPAYFSDLPRLQKLSLANNLLSGSVPSSIWQNKISNADQRLLLELQNNQFRNISGSTNLPPNVTLLLDGNPLCSANTLNQFCKLEGAGSETNGTSPRNSSNPCPNQRCPPPYEFYVNCFCVAPLIIGYRLRSPGFSDFPPYFTTFEEYLTSNLKLHANQLSYTFEWQVGPRVLMILKLFPEYVDNNSSRTFNSSEIQRIRNMFTGWVIPNRDLFGPYDLMDLVPYNNGTETSSNSGISTGALVGIILGSIACVISLSAIIILLLLRIRLRRHDAVSKPRHSSKIAIQIDGTRAFTYEELSAATNNFDSNAQIGQGGYGKVYKGILSNGTVVAIKRAQQGSLQGEKEFLTEIRILSRIHHRNLVSLIGYCDEEGEQMLVYEFMSNGTLRDHLSGTSFTSEKPLTFAMRLKIALESAKGLMYLHTEADPPIFHRDVKSSNILLDTKFTAKVADFGLSRLAPVSDVQGVVPGHVSTVVKGTPGYLDPEYFLTHTLTDKSDVYSLGVVFLELLTGMHPIAHGKNIVREVSLAFESGEISSVIDKHMGSYPSEHAEKFLNLALKCSEDEPEPRPKMAQVVRILENMCSVMTDSDTTRDTSTSSDSRKTVSFLGTPSSSSTINTPFVLRTV 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi68g00030 931 Pfam Protein kinase domain 614 881 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi68g00030 931 SUPERFAMILY Protein kinase-like (PK-like) 597 904 IPR011009 -
Vivi68g00030 931 SMART serkin_6 612 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi68g00030 931 ProSitePatterns Serine/Threonine protein kinases active-site signature. 735 747 IPR008271 GO:0004672|GO:0006468
Vivi68g00030 931 FunFam Leucine-rich repeat protein kinase family protein 576 687 - -
Vivi68g00030 931 Gene3D Ribonuclease Inhibitor 288 400 IPR032675 -
Vivi68g00030 931 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Vivi68g00030 931 Gene3D Ribonuclease Inhibitor 28 182 IPR032675 -
Vivi68g00030 931 Gene3D Transferase(Phosphotransferase) domain 1 688 910 - -
Vivi68g00030 931 SUPERFAMILY L domain-like 42 390 - -
Vivi68g00030 931 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 688 901 - -
Vivi68g00030 931 Pfam Leucine rich repeat 292 337 IPR001611 GO:0005515
Vivi68g00030 931 CDD STKc_IRAK 618 887 - -
Vivi68g00030 931 ProSitePatterns Protein kinases ATP-binding region signature. 618 640 IPR017441 GO:0005524
Vivi68g00030 931 Gene3D Ribonuclease Inhibitor 183 287 IPR032675 -
Vivi68g00030 931 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 28 189 - -
Vivi68g00030 931 PANTHER RECEPTOR-LIKE PROTEIN 55 37 887 - -
Vivi68g00030 931 Gene3D Phosphorylase Kinase; domain 1 583 687 - -
Vivi68g00030 931 MobiDBLite consensus disorder prediction 892 919 - -
Vivi68g00030 931 ProSiteProfiles Protein kinase domain profile. 612 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi68g00030 12 896 Receptor kinase-like Gene Family AT5G01950 55.791 0.0 951
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vivi68g00030 Pkinase 3.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi68g00030 - - gmx:100786467 1277.69