Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi68g00027 ATGGCTAGAGGGAAGGTGAAACTAGCATACATAATGAATAACTCAACTAGGAGGGCAACATTCAGAAAAAGGAAAAGTGGTATTCTAAAGAAGATCAATGAACTCAGTACCCTTTGCGGGATAGATGCATGCGCAATCATCTATGGAGAAAACTATCCTCAACCAGAAGTCTGGCCATCTAGGCTTGGAGTAAGAAGTGTATTGTACAGGTTCATGAGATTGCCTGAACTTGAACGAAGCAGAAAGATGGTGGATTTAGAAGGCTTCTTGTCAGAGAGCATTATGAAAGCTCAAGATCTGTTGAAAAAACAGATCGAGGAAAACCAAAAGAAGGAAATGACTTATCTTATTAGTCAATTTTTGCATACCGGTGAATATGGCATGGAAAATATGAGCTCGACTAAGGTTACTAGCCTAGCAGCCTTTATTGACAAGAGTCTGAAGGAAGTTGAGCAGAGATTGGATTCAATGGATGTCCATGACGAGGAGGTTGCAAATGGTGCTAGAGCTGTTAACGAAGGAGATATGCTGGCTAATATGGATCATGCTACTATCCAAGGTTTGGAGACGAGCATTAATTATGGTATGCATAGTGATGATCGATTTTCTATCAACTTCTCTGAGCCACCATTTAACGATGTTAATTTCAACCCAAATGGATTTTGA 666 0.3994 MARGKVKLAYIMNNSTRRATFRKRKSGILKKINELSTLCGIDACAIIYGENYPQPEVWPSRLGVRSVLYRFMRLPELERSRKMVDLEGFLSESIMKAQDLLKKQIEENQKKEMTYLISQFLHTGEYGMENMSSTKVTSLAAFIDKSLKEVEQRLDSMDVHDEEVANGARAVNEGDMLANMDHATIQGLETSINYGMHSDDRFSINFSEPPFNDVNFNPNGF 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi68g00027 221 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vivi68g00027 221 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Vivi68g00027 221 Coils Coil 94 114 - -
Vivi68g00027 221 Gene3D - 13 164 IPR036879 GO:0003677|GO:0046983
Vivi68g00027 221 PANTHER MADS BOX PROTEIN 3 155 - -
Vivi68g00027 221 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi68g00027 221 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677|GO:0046983
Vivi68g00027 221 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi68g00027 221 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi68g00027 221 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi68g00027 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi68g00027 1 209 Type I MADS-box Gene Family AT5G48670 41.038 4.03e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi68g00027 SRF-TF 3.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi68g00027 - - cam:101511888 240.35