Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi688g00006 ATGGCTGAATACGAAGAAGAAGAAAGATACGACGGGAACGGCGCCGGCGCCGGAGGAGGAGAAGCCGGAGGAGAAGGAGAAGGAGGAGAGGATCTTGACACCACTCATCCCTATCCTTCTTCTGCATCTTCTCCTCAAGCTCTCGATCAACCTGTCTCCAAATCTCGCCATGAATCTCGTGAATATGATAGAGAATCTTCGAGAAGCAGAGAAAAGGAACGAGAGAAAGATAGGAAAAGAGATAGGGATAGACCCAGAGATAGAGACAGAGAGAGGGATCGTGGTGAAGGGGAGAAGGAAAGGGATCCTCACCACAGAGACTATCGACACCGTGACAGAAAGGATAGGGAAAGGGGTAGGGATAGAGATAGGGATGATGGAGATTCTCACAGAAGTCGTGACCGTGACCATGACAGAAGAGGAAGAGGGGATTATGATCGAGAGGAAAGGCATAAACGTAGGTCTCGGTCTATTTCTCCGTCTAGAGATAGATCTGAGCATGGAACAAGGTCACGTTCTCGCTCGAAGAGCAAAAGGGTTAGTGGTTTTGATTTGGCCCCCCCTGCTTCTGCAATGTTAGCTGGTGCCGCCGCTGTTACAGGTCAGATTACTACACCAAATCCTACAATTCCTGGAGTGTTGCAAAACATGTTTCCAATGGCTACTAATCAGATGCAGCAGTTCAGTGCTCTCCCTATGATGCCAATTCAGGCTATGACACAACAGGCTACTCGACATGCTAGAAGGGTGTATGTTGGTGGACTCCCTCCGACAGCCAATGAGCAGTCTGTTGCTATTTACTTCAGCCAGGTCATGGCTAAGATTGGAGGAAACACTGCTGGTCCAGGTGATGCGGTGGTCAATGTTTACATTAACCATGACAAAAAATTCGCCTTTGTTGAGATGAGGTCTGTTGAGGAAGCTAGCAATGCAATGGCTTTGGATGGGATTATTTTTGAGGGGGCACCTGTCAAAGTTAGGAGACCTACTGATTACAACCCTTCTCTAGCTGCTACTCTAGGCCCAAGTCAACCTAACCCAAACCTAAACCTCGGCGCTGTTGGTTTAACCCCTGGGTCAGCTGGTGGACTTGAAGGCCCTGATCGCATTTTTGTAGGTGGACTTCCGTATTACTTCACAGAAACTCAGATCAGGGAGCTTTTAGAAACTTTTGGTCCTCTTCGGGGTTTCGATCTGGTGAAAGATAGAGAAACAGGAAATTCAAAGGGTTATGCATTTTGTGTTTACCAAGATCTCGCAGTTACAGATATTGCATGTGCAGCTCTAAATGGAATTAAGATGGGAGATAAGACTCTCACTGTTAGACGAGCTAATCAAGGTACAACCCAGCCTAAACCTGAACAAGAGAGCATTTTAATGCATGCACAACAGCAAATTGCACTGCAGAAACTTATATTTCAGCCAGCATTAGTGGCTACAAAGGTGGTGTGTCTAACCAACGCAGTTTCTCCTGACGAGCTCAAAGAAGATGAGGACTTTGAAGAAATTATCGATGACATGAGACAGGAATGCTCCAAATTTGGTACTTTGGTGAATGTTGTGATCCCTCGCCCACAACCAGATGGGGATTTATCTGGTGGAGTTGGAAAGGTGTTTTTGGAATATGTGGATACTGAGGGTGCTACAAAAGCCTGCACTGGGTTGAATGGGAGAAAATTCGGTGGAAATGAAGTAATAGCCGTCTTCTATCAAGAAAACAAGTTTGCTCAGGGGGATTATGAAGGCTAA 1749 0.4631 MAEYEEEERYDGNGAGAGGGEAGGEGEGGEDLDTTHPYPSSASSPQALDQPVSKSRHESREYDRESSRSREKEREKDRKRDRDRPRDRDRERDRGEGEKERDPHHRDYRHRDRKDRERGRDRDRDDGDSHRSRDRDHDRRGRGDYDREERHKRRSRSISPSRDRSEHGTRSRSRSKSKRVSGFDLAPPASAMLAGAAAVTGQITTPNPTIPGVLQNMFPMATNQMQQFSALPMMPIQAMTQQATRHARRVYVGGLPPTANEQSVAIYFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLEGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGTTQPKPEQESILMHAQQQIALQKLIFQPALVATKVVCLTNAVSPDELKEDEDFEEIIDDMRQECSKFGTLVNVVIPRPQPDGDLSGGVGKVFLEYVDTEGATKACTGLNGRKFGGNEVIAVFYQENKFAQGDYEG 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi688g00006 582 SUPERFAMILY RNA-binding domain, RBD 369 573 IPR035979 GO:0003676
Vivi688g00006 582 Gene3D - 243 344 IPR012677 -
Vivi688g00006 582 MobiDBLite consensus disorder prediction 53 170 - -
Vivi688g00006 582 Gene3D - 359 464 IPR012677 -
Vivi688g00006 582 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 368 446 IPR000504 GO:0003723
Vivi688g00006 582 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 59 580 IPR006529 GO:0003723|GO:0005634|GO:0006397
Vivi688g00006 582 CDD RRM1_U2AF65 247 329 - -
Vivi688g00006 582 SUPERFAMILY RNA-binding domain, RBD 240 334 IPR035979 GO:0003676
Vivi688g00006 582 CDD RRM2_U2AF65 368 444 - -
Vivi688g00006 582 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 248 331 IPR000504 GO:0003723
Vivi688g00006 582 SMART rrm2_1 482 568 IPR003954 GO:0003676
Vivi688g00006 582 FunFam U2 snRNP auxiliary factor large subunit 476 581 - -
Vivi688g00006 582 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 481 573 IPR000504 GO:0003723
Vivi688g00006 582 FunFam U2 snRNP auxiliary factor large subunit 345 458 - -
Vivi688g00006 582 PANTHER RNA-BINDING PROTEIN 34 580 - -
Vivi688g00006 582 Gene3D - 476 581 IPR012677 -
Vivi688g00006 582 MobiDBLite consensus disorder prediction 1 183 - -
Vivi688g00006 582 CDD RRM3_U2AF65 480 568 - -
Vivi688g00006 582 MobiDBLite consensus disorder prediction 36 52 - -
Vivi688g00006 582 SMART rrm1_1 482 568 IPR000504 GO:0003723
Vivi688g00006 582 SMART rrm1_1 249 327 IPR000504 GO:0003723
Vivi688g00006 582 SMART rrm1_1 369 442 IPR000504 GO:0003723
Vivi688g00006 582 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 505 565 IPR000504 GO:0003723
Vivi688g00006 582 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 370 439 IPR000504 GO:0003723
Vivi688g00006 582 FunFam U2 snRNP auxiliary factor large subunit 243 344 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi688g00006 370 561 Eukaryotic Initiation Factors Gene Family AT1G22760 26.943 8.15e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi688g00006 K12837 - gmx:100793801 738.413