Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi684g00003 ATGTCCAACAATAACCATAATCACACATTTCCAACTTCAGCTACTTTGTTGATTTTCTTGTTGCTAAATCTATGTCAAGAGATTTCATGTTTAACACAATATGAAGCCTTGTTAAAGTGGAAACAAAGTCTCCCTCAACAACCAATTCTTGATTCATGGATCATTAACAACTCAAGTTCAACGCAAACACCATGTTCATGGAGAGGTATCACTTGTGATTCAAAAGGAGATGTGACAATTCTAAACATGTCATATACTGGACTTCAAGGTAATCTTAATCACTTGAACTTATCAGTTTTTCCAAACCTTCTTCGTCTTGATCTTAAAACAAACAATCTCACCGGTGTCATACCTGAAAACATCGGCGTTCTTTCAAAACTCCAATTTCTTGATCTTTCTACTAATAATTTCACCGGAACTTTGCCTCTTTCTATTTCCAATTTGACACAAGTTTACGAGCTTGATGTTTCAAGAAACGATGTGTCTGGTATATTAGACCGTCGTTTGTTTCCTGATAAGCCCAGTTCTAAATCTGGGCTTATCAGCATTAGGAATCTTCTTTTCCAAGATACCCTCTTGGGTGGTCCGTTACCGAACGAAATAGGGAACATAAAAAACTTGACTTTACTAGCACTCGACGCAAACAATTTCTCCGGGCCTATTCCTTCATCTTTAGGAAACTGTGAACATTTAAGCATTCTTAGATTGAATGAAAACTATTTCTCTGGACCAATTCCACCAAGTCTTGGCAAACTGACCAATCTAACCGATCTTCGGTTTTTCACCAATGAATTAAATGGCACCGTGCCACAAGAATTCGGAAACCTTTCTTCTTTGGTTGTTTTACATCTTGCTGAAAACAACTTCATTGGTGAGTTACCACCAGAAGTTTGTAAAAGTGGCAAGCTTGTGAATTTCAGTGCAGCCTATAACAGTTTCACAGGTCCAATTCCAAGAAGCCTTAGAAATTGTCCTTCTTTGTATAGAGTTAGAATTGAATACAATGAGCTAACTGGTTATGCAGATCAAGATTTCGGAGTTTATCCGAATCTTAATTACTTGGATTTCAGCTATAATAAGGTGGAAGGTGATTTATCTTCTAAGTGGGGGTCTTGCAAGAACTTACAATCACTCAATATGGCTGGTAATTCGGTGAATGGTAACATTCCAACTGAGATTTTTGAATTGAAGCAGTTACAAGAGCTTGATCTATCATTTAACCAATTATCAGGAACTATTCCTTCTCAAATTGGAAACTCTTCGAATTTGTATACTTTAAGTTTGGGTGGAAATAGGCTTTCTGGTAAGATTCCAATCGAAATTGGAAAGCTTTCTAATTTGCAACATTTAGACCTTTCGATGAACATGTTGTTGGGAGAAATTCCATCTCAGATAGGAGATTGTTCCAAATTGTTGAATTTAAATTTGAGTAACAATCATTTGAATGGAACGATTCCGTTCCAAATAGGACAACTTGCATCTTTACAAGACTTTTTGGACTTGAGTTACAATTCGATTTCAGGGGAAATTCCTTCGAATCTTGGCTTGCTTTCGAATTTGATAAGCTTGAATATCTCAAACAATAATTTATCAGGTTCTATTCCTGATGGAATTAGTGACATGTTGAGTTTATCAAGTCTTAACCTCTCTTACAATAATTTAGAGGGTAGTGTTCCTAAAGGTGGCAATGGCATATTCAAAGTCAATTCCTCTCATGTTATTGATTTGAGCAACAACCAAGGACTATGTGGTGAATTCCAAGGTTTGAAACCTTGTAATGTCTCACTCATTCAACCTGGTGATGGGAGTAACAAAAAAAAGGTTTGGATTCCAATTGTTGCTTCTTTAGGAGGTGCACTTTTTCTATCATTGGTGTTTGTTGGTATATTTTTCTTGTGCTACAAGAAAAGTTCAAGAACTTCAAGAATAAAAAAGCCTTCCTTTAACATACCAAATCCATTCTCAATTTGGTACTTCAACGGAAGAGTTGTATACGGCGACATAATTGAAGCTACCAACAATTTCGACGATAGGTATTGTATCGGAGAAGGAGCATTCGGGAATGTTTACAAAGCCGAACTAAAAGGAGGTCAAATATTCGCAGTGAAAAAGTTAAAATGCGATGAAGAGAATTTAGACACTGAAAGTATAAAAACATTTGAAAATGAGGTTGAAGCTATGACAGAAACAAGGCATAGAAACATTGTAAAGCTTTATGGATTTTGTTGTGAAGGGATGCATACATTTCTTGTTTATGAGTATATGGATAAAGGGAGTTTGGCTGATATGTTGATGGATGATAAGAAAGCACTAGAACTTGATTGGGTTAAAAGGGTTGAGATTGTTACAGGTGTTGCAAGTGCTCTCTCTTATATGCATCATGATTGTTCACCACTTTTGATTCATAGGGACATTTCAAGCAAGAATATTTTGTTATCTTCAAATCTTGAAGCTCATGTATCAGATTTTGGTACTGCAAGGTTTCTTAAGCCAAACTCACCTATTTGGACTTCATTTGCTGGCACATATGGTTATGCTGCTCCAGAGCTTGCTTACACAATGGCGGTGACAGAGAAATGCGATGTATTCAGCTTTGGTGTTTTAGCATTTGAGATTCTAACTGGAAAACACCCTGGTGATCTTGTATCTTACATACAAACTTCTAATGATCAAAAGATAGATTTCAAAGAGATTTTAGATCCTCGTCTACCTTCTCCTCCAAAGAATGTTTTGAAGGAGTTGGTATTGGTGGGAAACTTGGCTCTTTCTTGTTTACACACAAATCCTCAATCTAGACCTACCATGAGAAGCATAGCACAATTCCTAGAAATGGAGACTACATATAATTCTTGA 2853 0.3642 MSNNNHNHTFPTSATLLIFLLLNLCQEISCLTQYEALLKWKQSLPQQPILDSWIINNSSSTQTPCSWRGITCDSKGDVTILNMSYTGLQGNLNHLNLSVFPNLLRLDLKTNNLTGVIPENIGVLSKLQFLDLSTNNFTGTLPLSISNLTQVYELDVSRNDVSGILDRRLFPDKPSSKSGLISIRNLLFQDTLLGGPLPNEIGNIKNLTLLALDANNFSGPIPSSLGNCEHLSILRLNENYFSGPIPPSLGKLTNLTDLRFFTNELNGTVPQEFGNLSSLVVLHLAENNFIGELPPEVCKSGKLVNFSAAYNSFTGPIPRSLRNCPSLYRVRIEYNELTGYADQDFGVYPNLNYLDFSYNKVEGDLSSKWGSCKNLQSLNMAGNSVNGNIPTEIFELKQLQELDLSFNQLSGTIPSQIGNSSNLYTLSLGGNRLSGKIPIEIGKLSNLQHLDLSMNMLLGEIPSQIGDCSKLLNLNLSNNHLNGTIPFQIGQLASLQDFLDLSYNSISGEIPSNLGLLSNLISLNISNNNLSGSIPDGISDMLSLSSLNLSYNNLEGSVPKGGNGIFKVNSSHVIDLSNNQGLCGEFQGLKPCNVSLIQPGDGSNKKKVWIPIVASLGGALFLSLVFVGIFFLCYKKSSRTSRIKKPSFNIPNPFSIWYFNGRVVYGDIIEATNNFDDRYCIGEGAFGNVYKAELKGGQIFAVKKLKCDEENLDTESIKTFENEVEAMTETRHRNIVKLYGFCCEGMHTFLVYEYMDKGSLADMLMDDKKALELDWVKRVEIVTGVASALSYMHHDCSPLLIHRDISSKNILLSSNLEAHVSDFGTARFLKPNSPIWTSFAGTYGYAAPELAYTMAVTEKCDVFSFGVLAFEILTGKHPGDLVSYIQTSNDQKIDFKEILDPRLPSPPKNVLKELVLVGNLALSCLHTNPQSRPTMRSIAQFLEMETTYNS 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi684g00003 950 Gene3D Ribonuclease Inhibitor 248 343 IPR032675 -
Vivi684g00003 950 Pfam Protein kinase domain 680 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi684g00003 950 PRINTS Leucine-rich repeat signature 399 412 - -
Vivi684g00003 950 PRINTS Leucine-rich repeat signature 444 457 - -
Vivi684g00003 950 Gene3D Ribonuclease Inhibitor 30 115 IPR032675 -
Vivi684g00003 950 Gene3D Phosphorylase Kinase; domain 1 644 754 - -
Vivi684g00003 950 Gene3D Transferase(Phosphotransferase) domain 1 755 949 - -
Vivi684g00003 950 Gene3D Ribonuclease Inhibitor 344 594 IPR032675 -
Vivi684g00003 950 ProSiteProfiles Protein kinase domain profile. 675 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi684g00003 950 SUPERFAMILY Protein kinase-like (PK-like) 647 944 IPR011009 -
Vivi684g00003 950 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 235 943 - -
Vivi684g00003 950 SUPERFAMILY L domain-like 60 267 - -
Vivi684g00003 950 SMART LRR_typ_2 541 564 IPR003591 -
Vivi684g00003 950 SMART LRR_typ_2 396 420 IPR003591 -
Vivi684g00003 950 SMART LRR_typ_2 517 540 IPR003591 -
Vivi684g00003 950 SMART LRR_typ_2 276 300 IPR003591 -
Vivi684g00003 950 SMART LRR_typ_2 444 468 IPR003591 -
Vivi684g00003 950 SMART LRR_typ_2 124 148 IPR003591 -
Vivi684g00003 950 FunFam Nuclear pore complex protein NUP107 31 171 - -
Vivi684g00003 950 FunFam Leucine-rich repeat receptor-like protein kinase TDR 273 594 - -
Vivi684g00003 950 FunFam Leucine-rich repeat receptor protein kinase EMS1 173 272 - -
Vivi684g00003 950 SMART serkin_6 675 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi684g00003 950 SUPERFAMILY RNI-like 245 584 - -
Vivi684g00003 950 Pfam Leucine rich repeat N-terminal domain 32 73 IPR013210 -
Vivi684g00003 950 ProSitePatterns Tyrosine protein kinases specific active-site signature. 800 812 IPR008266 GO:0004672|GO:0006468
Vivi684g00003 950 ProSitePatterns Protein kinases ATP-binding region signature. 681 704 IPR017441 GO:0005524
Vivi684g00003 950 Pfam Leucine rich repeat 398 457 IPR001611 GO:0005515
Vivi684g00003 950 FunFam MDIS1-interacting receptor like kinase 2 755 948 - -
Vivi684g00003 950 FunFam Leucine-rich repeat receptor protein kinase MSP1 638 754 - -
Vivi684g00003 950 Gene3D Ribonuclease Inhibitor 116 172 IPR032675 -
Vivi684g00003 950 Gene3D Ribonuclease Inhibitor 173 247 IPR032675 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi684g00003 16 848 Receptor kinase-like Gene Family AT4G08850 39.785 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi684g00003 Pkinase 3.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi684g00003 - - gmx:100814345 1430.62