Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi684g00001 ATGGATTTCAGCAAAAACAAAGTTCAAGGTGATTTATCTTCCAAATGGGGATCCTGCGAAAAATTGCAATTACTACGTATGGCTGGTAATTCAGTAAATGGTAACATTCCAGGAGAAATTTTTCATTTGAAACAATTACAAAAGCTTGATCTATCATCCAACCAATTATCAGGAACTATTCCTTCACAAATTGGATATTCTTTAAATTTGTATAGCTTAAATTTAGGTGGAAATAAGCTTTCTGGTAAAATACCAATTGAAATTGGAAAGCTTTCTAATTTGCAATATTTAGACCTTTCAATGAACATGTTGTTGGGAGAAATTCCGATTCAGATTCGAGATTGTTCAAACTTGTTGAGTTTAAATTTGAGTAATAATCACTTGAATGGAACAATTCCATTCCAAATTGGAAGTCTTGCAACTTTACAAATCCTTTTGGATCTAAGTTACAATTCATTTTCAGGGGAAATTCCTGCTACTATTGGTCACCTTTTAAATTTGATAAGTTTGAATATCTCAAACAATAATTTATCTGATTCAATTCCTGATGAAATTAATGGAATGTTGAGTTTGTCGAATCTTAACCTCTCTTACAATCACTTAGAGGGTAAAATTCCGAAAGGTGGCATATTCAAATCCAACTCTTCTACTTCACTTGATTTGAGCAACAACCAAGGTCTATGTGGTGATTTCAAAGGTTTGAAACCTTGTAGTGTATCACTTAGTCAACCAAACGGTGATGGAAGTGACAAGGAAAGTGTTGTGATTCCTATTGTTGCTTCTTTAGGAGGTGCACTTTTTCTTTTATTGATATTTGTTGGCATATTTTTCTTATGCTACAAGAAAAATTCAAGACCTTCAAGGCTAAAAGTTTCTTCAGTGAAGATACCAAATCCATTTTCGGTTTTGTACTTCAATGGAAGAGTCATATACGAAGACATAATTGAAGCAACCAACAATTTTGACGACAAATATTTCATTGGCGGAGGAGCATTTGGAAATGTTTACAAAGCACAGCTGAAAGGAGGACAAATGTTGGCGGTGAAAAAGCTGAAATACGATGACGAGAGTTTAGTTATCGATAGCATAAAAACATTTGAAAATGAGGTTAAATCTATAACAGAAACAAGGCACAGGAACATCGTGAAGTTTTATGGATTTTGTTTTGCAGGGATCCACACATTTTTGGTTTATGAGTATATGGATAAAGGGAGTTTGGCTGATATGTTGATTGATGATATGAAATCAATAGAACTTGATTGGGTTAAAAGGGTTGAGATTGTTACAGGTGTTGCAAGTGCTCTTTCTTATATGCATCATGATTGTTCACCACTTTTGATTCATAGAGACATTTCAAGCAAGAATATTTTGTTATCTTCAAATCTTGAAGCTCATGTTTCAGATTTTGGTACTGCAAGGTTTCTTAAGCCAAACTCGCCTATTTGGACTTCATTTGCCGGCACATATGGTTATGCTGCTCCAGAGCTTGCTTACACAATGGCGGTGACAGAGAAATGTGATGTATTCAGCTTTGGTGTTTTAGCATTTGAGATTCTAACTGGAAAACACCCTGGTGATCTTGTTTCTGACATACAAGCATCCAATGTTCAGAAGATAGATTTAAAAGAGATTTTAGATCCTCGTCTCCCATCTCCTCCAAATAATGTTTTGAATGAATTGGAAATGGTGGAAAATTTAGCTGTTTCTTGTTTACACACAAATCCTCAGTCTAGACCTACCATGAGAAGCATTTCCCAATTGCTTATAAAAATGTAG 1776 0.3457 MDFSKNKVQGDLSSKWGSCEKLQLLRMAGNSVNGNIPGEIFHLKQLQKLDLSSNQLSGTIPSQIGYSLNLYSLNLGGNKLSGKIPIEIGKLSNLQYLDLSMNMLLGEIPIQIRDCSNLLSLNLSNNHLNGTIPFQIGSLATLQILLDLSYNSFSGEIPATIGHLLNLISLNISNNNLSDSIPDEINGMLSLSNLNLSYNHLEGKIPKGGIFKSNSSTSLDLSNNQGLCGDFKGLKPCSVSLSQPNGDGSDKESVVIPIVASLGGALFLLLIFVGIFFLCYKKNSRPSRLKVSSVKIPNPFSVLYFNGRVIYEDIIEATNNFDDKYFIGGGAFGNVYKAQLKGGQMLAVKKLKYDDESLVIDSIKTFENEVKSITETRHRNIVKFYGFCFAGIHTFLVYEYMDKGSLADMLIDDMKSIELDWVKRVEIVTGVASALSYMHHDCSPLLIHRDISSKNILLSSNLEAHVSDFGTARFLKPNSPIWTSFAGTYGYAAPELAYTMAVTEKCDVFSFGVLAFEILTGKHPGDLVSDIQASNVQKIDLKEILDPRLPSPPNNVLNELEMVENLAVSCLHTNPQSRPTMRSISQLLIKM 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi684g00001 591 PANTHER LEUCINE RICH REPEAT KINASE 2 1 589 - -
Vivi684g00001 591 Pfam Leucine Rich Repeat 166 185 IPR001611 GO:0005515
Vivi684g00001 591 Pfam Protein kinase domain 324 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi684g00001 591 Gene3D Phosphorylase Kinase; domain 1 289 400 - -
Vivi684g00001 591 SUPERFAMILY Protein kinase-like (PK-like) 296 588 IPR011009 -
Vivi684g00001 591 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 84 - -
Vivi684g00001 591 SMART LRR_typ_2 188 213 IPR003591 -
Vivi684g00001 591 SMART LRR_typ_2 164 187 IPR003591 -
Vivi684g00001 591 SMART LRR_typ_2 43 67 IPR003591 -
Vivi684g00001 591 SMART LRR_typ_2 91 115 IPR003591 -
Vivi684g00001 591 FunFam Leucine-rich repeat receptor protein kinase MSP1 285 400 - -
Vivi684g00001 591 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 109 237 - -
Vivi684g00001 591 SUPERFAMILY L domain-like 2 228 - -
Vivi684g00001 591 Gene3D Transferase(Phosphotransferase) domain 1 401 591 - -
Vivi684g00001 591 ProSiteProfiles Protein kinase domain profile. 321 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi684g00001 591 ProSitePatterns Protein kinases ATP-binding region signature. 327 350 IPR017441 GO:0005524
Vivi684g00001 591 FunFam MDIS1-interacting receptor like kinase 2 401 591 - -
Vivi684g00001 591 ProSitePatterns Tyrosine protein kinases specific active-site signature. 446 458 IPR008266 GO:0004672|GO:0006468
Vivi684g00001 591 Gene3D Ribonuclease Inhibitor 1 240 IPR032675 -
Vivi684g00001 591 PRINTS Leucine-rich repeat signature 91 104 - -
Vivi684g00001 591 PRINTS Leucine-rich repeat signature 46 59 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi684g00001 1 494 Receptor kinase-like Gene Family AT4G08850 44.489 1.09e-129 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi684g00001 Pkinase 8.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi684g00001 - - gmx:100814345 769.229