Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi682g00006 ATGGTACTCACCGGCAGAGAAAGTTTGATCCGTTTAATCGGAAAACGCCGCCGTTTCCTTCCCAATCGTCTTTCCATTCTCTCCGATCCCATTCCAAACCCTAACCCCCAACCGGAACATCCGACCACACCCGATGACAATGACAACCCCCAAAACGACGCCGTACAGTGTCCCGTTTGTTCCCTCACACTTCCCTCCGATAACCACCGCATCAACTCTCATCTCGATTCGTGTCTCTCTCAACCTAAACTAAGTGGAACAAACCGGAAACGAAAACTCACACAACAAACTCTACTTCAGTTAAACTTCACTCGCCCTGATCCACACGCGCCGGATTACACGCTCCCGAAAAAATTGCAGTTTACTGAAAGTCCCATTGCTGATAAGGATTCTGCAATTATTGCAACTGAATCTTCGCCATTGTCATCCGAATTCACCCCTATTGATACTAACCATCATGATATTGTTGATAATGTTGATGATGAATGTGATGTTTTTGAAGTAAAGCTTGAAACTTTGATTGTGGGTAGGAGATATGCTGATCAAGAGGAAATATGTGCTGGTGATACGGTCTCTCTTTTGAGAGATTCACAAAATGTTAAGGATCCAAATGCCATCAAGGTTGTTTCTGTAGATTCTGAGTATTCTAAATTTTTAGGGTATCTTCCACGCGAGCTGGCACAGTATCTATCTCCTCTAATTGACAACTATGACATTGTATTTCAGGGACATGTCACTTCTGTTCCTAAACATTCTCGTGATGCAGTTCCAATTCGGATTATGTGCCACAGAACACCAGATGGTGAAAGAAAGTATGAAGATGAGACTTATAAATGTTTATGGAAAAATGCTCAGCATGTTGTTGAATCTGCTATCAAGAATCCTTCATCTGTAAAGTACCAGCTAAATTTTTGTCTTATGATACAAGAAGCCTTAAAAAATAATATTCACCTTCTAACAGAAGATGAAAAAACCTATATAGAATCATTCACTTCACTTTCAAATGACAGTCAGAGACTTTTTATTCGGATATACACTAGAAAAGGACCTTGGTTTCGCATGTCTAGTATTTTGTATCCCGAAATATTGGATACTCAAAAGGCAGTCAAGGAACTTGCGGAGAAAGAATACATTTGCACTGTTGAAGATGGAAATCAACTATGTGAAAGAGACATGAATGATATATTAGATGTGCTCACTGTCTCTGAGCTACGTGAAGTTTTGTGTTTCTTGCTTAAAAAGAGTTGCGGTCACGGGATGAAGAAGCAAGATCTCATTTCATCTATTCTTTCTACATATGCAGGATTATGGCCACACCTATCAAATATGATTTTAGATAAAACTGGTTTCTGTATCAAGATTTCTTCAAAAGCTGAATCTCTCATCTGGCGTATCGAGAGACTTTTCTTCTTAAACGGAGAACAGGATCTTTCGTCCTTTCTACTAGTTGATATAGGAAAAATGAAATATCCAACTTATACCTGCACAATATTGGAACCAGTATTCTCGAATCACACGGATCTTCTTGCATTCGAAGAGGCCATTGAAGTGGCACAAGTTATGGATGAAGCCCTTGATGCAAACAAAAGTGATATCGTATTGAGGTGCATAAAGATCGCTGAATCCCGTGTATCCGCTGTGTTGCCCATCCAGTGCTCGACTTCTAAATCAGTATCTACATTCCATCACTTATTTACAGCATCATGGGTATATTCCAAAGTGGTTACGTTAGGGATTTCCTTTCTTGAGCAGGAGCGCAGGTACAGCGATGCAATTGACCTACTTAAGTTGCTGCAAAATGTTTTCACTTGTGATGTAAAAAGAGGATATTGGGCACTGAGATTATCTGTTGATCTGGAGCATCTGGGTTACATAGATGAGAGCCTTCAAGTGGCTGAAAACGCGTTGCTGGATCCATGGGTACGAGCTGGTGCAAGAATGGCATTACAAAGACGTGTTATTCGCTTAGGAAAACCACCAAGACGGTGGAAAGTTCCTAGTTTTTCTAAATCTGTACTGCGAAAGATCCCTGAGGTTTATGTTCAAGGCAGACCTTTGAATTCTGAACTGGGAGCAAAAAACAGGTTTTACAATGAAGAAGGGATGCAATGCGGGGTCGAAGAGCTTGCTTTGGATTATTACGCCGCAGAGGGATGGCAAGGTGTTCATACAGAGAGCGGCATATGGTTAACTATTTTTGGGCTTCTTATGTGGGATGTAATATATGCCGATGTGCCTAATGTCTTCCATACTAGATTTCAGAATGCTCCTTTGGATTTGGGTACCGATAGTTTTTACATGGCGAGAGCGAGTATAATAGAATCCCATTTACAGCAAATTCGCGATGGCATGGCTGAGGAGTTTCTTATCAAGTCATGGGAAACACATAACGGGACATCTTGTAGAGGAGTTAACTGGGAACACCATTCTTTAGACGAGCTTCGTGCTGCTGTTACTTGTGTTAGGGGCTCTTGTTTGGCATCTTTCTGCAAGCTTCTTTGCGAAGACTACAAAAGCTGGTCTAGCGGAATGCCTGATTTGCTGCTATGGCGATTCTGTGGAGAATACAGTGGAGAAGCTAAGCTTGTTGAAGTAAAAGGTCCTAAGGATCGACTCTCGGAACAGCAGCGAGCATGGCTATTGATGCTTATGGATTGTGGATTCGAGATCGAGGTTTGTAAAGTGAAATCTTTGTAG 2697 0.4134 MVLTGRESLIRLIGKRRRFLPNRLSILSDPIPNPNPQPEHPTTPDDNDNPQNDAVQCPVCSLTLPSDNHRINSHLDSCLSQPKLSGTNRKRKLTQQTLLQLNFTRPDPHAPDYTLPKKLQFTESPIADKDSAIIATESSPLSSEFTPIDTNHHDIVDNVDDECDVFEVKLETLIVGRRYADQEEICAGDTVSLLRDSQNVKDPNAIKVVSVDSEYSKFLGYLPRELAQYLSPLIDNYDIVFQGHVTSVPKHSRDAVPIRIMCHRTPDGERKYEDETYKCLWKNAQHVVESAIKNPSSVKYQLNFCLMIQEALKNNIHLLTEDEKTYIESFTSLSNDSQRLFIRIYTRKGPWFRMSSILYPEILDTQKAVKELAEKEYICTVEDGNQLCERDMNDILDVLTVSELREVLCFLLKKSCGHGMKKQDLISSILSTYAGLWPHLSNMILDKTGFCIKISSKAESLIWRIERLFFLNGEQDLSSFLLVDIGKMKYPTYTCTILEPVFSNHTDLLAFEEAIEVAQVMDEALDANKSDIVLRCIKIAESRVSAVLPIQCSTSKSVSTFHHLFTASWVYSKVVTLGISFLEQERRYSDAIDLLKLLQNVFTCDVKRGYWALRLSVDLEHLGYIDESLQVAENALLDPWVRAGARMALQRRVIRLGKPPRRWKVPSFSKSVLRKIPEVYVQGRPLNSELGAKNRFYNEEGMQCGVEELALDYYAAEGWQGVHTESGIWLTIFGLLMWDVIYADVPNVFHTRFQNAPLDLGTDSFYMARASIIESHLQQIRDGMAEEFLIKSWETHNGTSCRGVNWEHHSLDELRAAVTCVRGSCLASFCKLLCEDYKSWSSGMPDLLLWRFCGEYSGEAKLVEVKGPKDRLSEQQRAWLLMLMDCGFEIEVCKVKSL 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi682g00006 898 Gene3D - 159 278 - -
Vivi682g00006 898 Pfam VRR-NUC domain 782 896 IPR014883 GO:0016788
Vivi682g00006 898 SMART VRR_NUC_a_2 780 897 IPR014883 GO:0016788
Vivi682g00006 898 SMART HIRAN_2 169 264 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vivi682g00006 898 Gene3D Classic Zinc Finger 51 82 - -
Vivi682g00006 898 Gene3D - 838 896 IPR011856 GO:0003676
Vivi682g00006 898 ProSiteProfiles Zinc finger UBZ4-type profile. 54 83 IPR006642 GO:0003677|GO:0006281
Vivi682g00006 898 MobiDBLite consensus disorder prediction 24 55 - -
Vivi682g00006 898 SMART c2hc_5 54 79 IPR006642 GO:0003677|GO:0006281
Vivi682g00006 898 CDD FAN1-like 299 896 - -
Vivi682g00006 898 PANTHER FANCONI-ASSOCIATED NUCLEASE 1 5 897 IPR033315 GO:0004518|GO:0036297
Vivi682g00006 898 Pfam HIRAN domain 170 251 IPR014905 GO:0003676|GO:0008270|GO:0016818
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi682g00006 113 260 RAD5 or RAD16-like Gene Family AT5G05130 29.605 1.33e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi682g00006 K15363 - gmx:100793881 1273.07