Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi682g00004 ATGAAGACTCTTCTTCATCACATTCACTTAACACTCTTCACAACACTCTTAATCTCATCACTCTCCAATCTCCAAACTTGTTCCTCAAACAACAACAACAACAACATAAACATTCAACTAAACGACGACATCCTCGGCCTAATGGTCTTCAAATCCGATCTCAACGACCCTTCATCTTCCCTCTCATCATGGAATGAAGATGACATCAATCCATGTTCATGGCAATACATAAAATGCAACCAACAAGGAAGAGTCTCCCAACTCTCACTTTCTGGTTTAGCCTTATCAGGTAAAATAGGAAGAGGCCTTGAAAAATTGCAGCACTTGCAAGTTTTGCAGCTTTCTCACAACAATTTGAGTGGAGCCATTAGTCCTTCGCTAACTCTTCCGAACACGCTTCAAAGCTTAAACCTTAGTCATAACTCGATCTCGGGTCAATTACCAGACTCTTTCATCGATATGAGCTCGATGAGGTTCCTTGATCTCTCGTATAATTCGTTCGCAGGACAGGTGTTTGATGGTTTTTTCGAGAATTGTTCTTTGCTTAGACGCGTTTCTTTCGCTATGAACTTGTTTGAAGGACAGATTCCTAGTACAATAGCTAAGTGTTCTTTGGTGAATAATGTAGATTTTTCGAATAATCACTTTAGTGGAAATGTTGATTTTGCTAAGGTTTGGTCATTGAGTAGGCTTAGGTATTTGGATCTGTCAAACAATGATTTATCTGGAAACTTGGTTGATGGTGTTTCAAATTTGCATAACTTGAAAGAGTTGTTGCTGCAAAATAATCACTTTTCAGGTAATTTACCAAAGGATATTGGACTATGTATTCATTTGGATAGAGTTGATTTTGGTAATAATCAGTTTAGTGGTGAGTTACCTGAATCACTTGGGAGATTAAGCTATTTGAGATATTTTAGGGTTTCAGATAATCACTTATTTGGTGAATTTCCTCAATGGATTGGTAACTTGATTAGTTTGGAGCATTTGGACTTTTCTAATAATCAATTCTATGGAAGCATTCCTTTGTCATTGGTTTCATGCATGAAGTTGTCCAAGATTTTTCTTAGAGGGAATGGTTTCAATGGTACTATACCTGAGGGCTTGTTTGGATTAGGGTTAGAGGAAATCGATTTTTCGCGTAATGGACTAATCGGTTCGGTTCCGGCTGGATCGAACAGGTTGTTAGAAACTCTTACAATGTTGGATCTTTCGGTTAATCGGTTAAAAGGGAATGTTCCTGCAGAAATCGGGCTGCTTTCGAAGCTGAGATACTTGAATTTTTCTTGGAATGATCTTGATTCTGAGATTCCACCGGAATTCGGTCTACTTCAGAATCTAGAGGTTTTGGATCTTCGTAATTGCGCGTTGTTTGGTTCGATTCCGGTGGATATATGTGATTCGGGAAATTTAGATGTTCTTCAACTGGATGGAAATTCTTTGAAGGGGCCTATTCCAGAAGATATTGGGAATTGTTCATCTCTTTACTTGCTGAGTTTATCATTCAACAATTTGACAGGTCCAATCCCGAAGTCGATGTCGAATCTAAACAAGCTCAAAATCCTCAACTTGGAATTCAATGAACTTAACGGAGAGCTGCCGATGGAGCTCGGAAAGCTTCAAAATCTTCTTGCTGTGAATGTATCACACAACAGCCTCACGGGAAGGCTTCCGGTCGGTAGCATATTTCAAAACTTAGACAAAAGTTCTTTGGAAGGAAACTACGGTCTTTGCTCGCCCTTGTTGAAAGGTCCATGCATAATGAATGTATCAAAGCCTCTAGTTCTTGATCCACATGGCTTTGACAACCAAATGAATCCTCGAACACCGAGAAACGAATCGTCTGAGTCAAGCGGTTCGATTCATCACCACAGGTTTCTTAGTGTTTCGGCGATTATAGCAATTGCGGCCTCTTTTGTGATTGTATTAGGAGTGATTGCTATTAGTCTACTTAACGCTTCGGTAAGGAGAAAGCTAGCGTATGTTGAGAATAGTTTGGAAAGCATGTGTTCGAGTTCCTCAAAATCGGGAGCACCGGCCACAGGTAAACTCATTCTTTTTGATTCACAATCCTCGCAAGATTGGATCAGCAATCCGGAAAACTTGCTCAGCAAGGCATCTGAGATTGGCGAAGGAGTTTTCGGAACGGTTTATAAAATTCCGTTAGGATCGCAGCAAGGAAGAAATGTCGCAATCAAGAGGCTCGTCACATCAAACATAATCCAATTTCCGGAAGACTTCGACAGGGAAGTTAGAATTCTAGGCAAAGCCCGACACCCGAATTTGATAGCATTGAAAGGATACTACTGGACTCCTCAACTTCAGCTTTTAGTATCCGAATTCGCACCGAATGGTAACTTGCAATCCAAGCTACATGAAAAGCTTCCGTCAAGTCCTTCACTTTCTTGGCCTAACAGATTCAAGATTTTACTCGGAACAGCAAAGGGACTCTCACATTTGCACCATTCATTCCGGCCACCAATCATTCACTACAACATAAAACCGAGCAACATCTTACTCGACGAAAACTTCAACGCGAAGATATCCGATTTCGGGCTAGCCAGGCTTTTAACAAAGCTAGACAAGCACGTGATGAGTAACAGGTTTCAAAGTGCGTTAGGCTACGTGGCACCCGAGTTAGCCTGTCAGAGCTTAAGGGTCAATGAGAAATGCGACGTGTATGGTTTTGGCGTGATGATACTCGAGTTAGTGACGGGTAGGAGGCCGGTGGAGTACGGTGAAGATAATGTGTTGATATTGAATGATCATGTGAGGGTTTTGCTTGAACATGGCAATGTTTTGGAGTGTGTGGATCCAAGTTTGATGAATGAGTATCCTGAAGATGAGGTTTTGCCTGTTTTGAAGCTGGCAATGGTGTGTACGTCTCAAATACCGTCTAGCCGTCCTACGATGGCCGAAGTTGTACAAATATTGCAGGTCATTAAAACTCCGGTTCCTCAAAGGATGGAAGTGTTTTAA 2979 0.4115 MKTLLHHIHLTLFTTLLISSLSNLQTCSSNNNNNNINIQLNDDILGLMVFKSDLNDPSSSLSSWNEDDINPCSWQYIKCNQQGRVSQLSLSGLALSGKIGRGLEKLQHLQVLQLSHNNLSGAISPSLTLPNTLQSLNLSHNSISGQLPDSFIDMSSMRFLDLSYNSFAGQVFDGFFENCSLLRRVSFAMNLFEGQIPSTIAKCSLVNNVDFSNNHFSGNVDFAKVWSLSRLRYLDLSNNDLSGNLVDGVSNLHNLKELLLQNNHFSGNLPKDIGLCIHLDRVDFGNNQFSGELPESLGRLSYLRYFRVSDNHLFGEFPQWIGNLISLEHLDFSNNQFYGSIPLSLVSCMKLSKIFLRGNGFNGTIPEGLFGLGLEEIDFSRNGLIGSVPAGSNRLLETLTMLDLSVNRLKGNVPAEIGLLSKLRYLNFSWNDLDSEIPPEFGLLQNLEVLDLRNCALFGSIPVDICDSGNLDVLQLDGNSLKGPIPEDIGNCSSLYLLSLSFNNLTGPIPKSMSNLNKLKILNLEFNELNGELPMELGKLQNLLAVNVSHNSLTGRLPVGSIFQNLDKSSLEGNYGLCSPLLKGPCIMNVSKPLVLDPHGFDNQMNPRTPRNESSESSGSIHHHRFLSVSAIIAIAASFVIVLGVIAISLLNASVRRKLAYVENSLESMCSSSSKSGAPATGKLILFDSQSSQDWISNPENLLSKASEIGEGVFGTVYKIPLGSQQGRNVAIKRLVTSNIIQFPEDFDREVRILGKARHPNLIALKGYYWTPQLQLLVSEFAPNGNLQSKLHEKLPSSPSLSWPNRFKILLGTAKGLSHLHHSFRPPIIHYNIKPSNILLDENFNAKISDFGLARLLTKLDKHVMSNRFQSALGYVAPELACQSLRVNEKCDVYGFGVMILELVTGRRPVEYGEDNVLILNDHVRVLLEHGNVLECVDPSLMNEYPEDEVLPVLKLAMVCTSQIPSSRPTMAEVVQILQVIKTPVPQRMEVF 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi682g00004 992 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 351 979 - -
Vivi682g00004 992 Pfam Leucine Rich Repeat 230 251 IPR001611 GO:0005515
Vivi682g00004 992 Pfam Leucine Rich Repeat 422 441 IPR001611 GO:0005515
Vivi682g00004 992 Gene3D Ribonuclease Inhibitor 198 301 IPR032675 -
Vivi682g00004 992 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 697 781 - -
Vivi682g00004 992 Gene3D Phosphorylase Kinase; domain 1 686 782 - -
Vivi682g00004 992 FunFam Inactive leucine-rich repeat receptor-like protein kinase 222 319 - -
Vivi682g00004 992 Gene3D Transferase(Phosphotransferase) domain 1 783 989 - -
Vivi682g00004 992 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 334 590 - -
Vivi682g00004 992 FunFam Leucine-rich repeat receptor-like protein kinase 40 198 - -
Vivi682g00004 992 ProSitePatterns Protein kinases ATP-binding region signature. 709 733 IPR017441 GO:0005524
Vivi682g00004 992 MobiDBLite consensus disorder prediction 599 619 - -
Vivi682g00004 992 Gene3D Ribonuclease Inhibitor 304 589 IPR032675 -
Vivi682g00004 992 Pfam Leucine rich repeat 108 166 IPR001611 GO:0005515
Vivi682g00004 992 Pfam Leucine rich repeat N-terminal domain 41 80 IPR013210 -
Vivi682g00004 992 SUPERFAMILY Protein kinase-like (PK-like) 695 982 IPR011009 -
Vivi682g00004 992 CDD STKc_IRAK 709 979 - -
Vivi682g00004 992 ProSiteProfiles Protein kinase domain profile. 703 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi682g00004 992 SUPERFAMILY RNI-like 112 552 - -
Vivi682g00004 992 SUPERFAMILY L domain-like 41 219 - -
Vivi682g00004 992 PRINTS Leucine-rich repeat signature 396 409 - -
Vivi682g00004 992 PRINTS Leucine-rich repeat signature 231 244 - -
Vivi682g00004 992 SMART LRR_typ_2 444 468 IPR003591 -
Vivi682g00004 992 SMART LRR_typ_2 252 276 IPR003591 -
Vivi682g00004 992 SMART LRR_typ_2 420 443 IPR003591 -
Vivi682g00004 992 SMART LRR_typ_2 106 130 IPR003591 -
Vivi682g00004 992 SMART LRR_typ_2 516 540 IPR003591 -
Vivi682g00004 992 SMART LRR_typ_2 228 251 IPR003591 -
Vivi682g00004 992 SMART LRR_typ_2 324 348 IPR003591 -
Vivi682g00004 992 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 782 987 - -
Vivi682g00004 992 Pfam Protein kinase domain 705 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi682g00004 992 MobiDBLite consensus disorder prediction 605 619 - -
Vivi682g00004 992 Gene3D Ribonuclease Inhibitor 39 197 IPR032675 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi682g00004 8 989 Receptor kinase-like Gene Family AT3G28040 61.062 0.0 1179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Vivi682g00004 Pkinase 7.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi682g00004 - - pvu:PHAVU_008G017400g 1405.96