Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi67g00110 ATGGGGAATCAAAAGCTGAAATGGACGCAGGAAGAAGAAGACGCACTCATTGCCGGAATTGACAAACACGGCACCGGAAAATGGAAAACCATTCTCGTTGATCCTCAGTTCGCTCATTTACTCACTTCACGTTCCAACATCGACCTCAAGGATAAATGGCGAAATATGAATGTTTATGTGAATAACGGTTCACAAGGTTCCAGTTCTAGAACTCCGAAGCCTAAAGCTGCTCCTGTTTCTACCAGTGCCGTTCTTCAAATTTGTGCTCCTCCTTCTGATACTGTTGCTGCCTCTGATCCTTCTCCAATTGAACCAGAGGTTAAAAATCCTCCAAGGTATAATGCCATGGTTTTTGACGCTCTATCTACATTAAAGGATGCTAATGGGTCCGACCTAAATGCCATTGCTAGTTTCATTGAGCAAAAGCACCAGCAGGTTCCTCAAAATTTCAGAAGGGCACTGAGTTCAAGGCTGAGGACCCTTGTGAATCAAGGGAAGCTTGAAAAGGTACTAAATTGTTATAAGATAAAAAAAGACGCCCCATTGGTGACAAAAACACCTTCGCCAAAACAAAAGGATGTAAGGCCGCAACAGCAATTATCGGTCTATGATGATATGGTGAAGAAAGCAGCTGATACTGCAGCATACATGGTTGCAGAGGCTGAAAACAGATCTCGTCTGGCAAGTGAGGCAGTCATGGAGACTGAAAGATTCGCACGATTGGCTGAAGAAAATGATGCAGTGTTGTTGCTAGCAGAACAACTTTATGAACAATGTTTGCACGGTGAAACTTTCAAGTGGGCTTAA 807 0.4337 MGNQKLKWTQEEEDALIAGIDKHGTGKWKTILVDPQFAHLLTSRSNIDLKDKWRNMNVYVNNGSQGSSSRTPKPKAAPVSTSAVLQICAPPSDTVAASDPSPIEPEVKNPPRYNAMVFDALSTLKDANGSDLNAIASFIEQKHQQVPQNFRRALSSRLRTLVNQGKLEKVLNCYKIKKDAPLVTKTPSPKQKDVRPQQQLSVYDDMVKKAADTAAYMVAEAENRSRLASEAVMETERFARLAEENDAVLLLAEQLYEQCLHGETFKWA 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi67g00110 268 PANTHER SINGLE MYB HISTONE 4 1 264 IPR044597 GO:0003691
Vivi67g00110 268 SMART h15plus2 107 173 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi67g00110 268 Pfam linker histone H1 and H5 family 111 170 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi67g00110 268 Gene3D - 106 193 IPR036388 -
Vivi67g00110 268 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 109 178 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi67g00110 268 FunFam Telomere repeat-binding factor 1 2 58 - -
Vivi67g00110 268 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Vivi67g00110 268 SUPERFAMILY "Winged helix" DNA-binding domain 109 189 IPR036390 -
Vivi67g00110 268 CDD SANT_TRF 7 57 - -
Vivi67g00110 268 SUPERFAMILY Homeodomain-like 3 58 IPR009057 -
Vivi67g00110 268 SMART sant 4 59 IPR001005 -
Vivi67g00110 268 Gene3D - 8 88 - -
Vivi67g00110 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 64 IPR017930 -
Vivi67g00110 268 CDD H15 111 170 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi67g00110 268 Pfam Myb-like DNA-binding domain 6 56 IPR001005 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi67g00110 1 265 Single Myb Histone (SMH) Gene Family AT1G72740 45.263 1.49e-68 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi67g00110 Linker_histone 3.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi67g00110 K09422 - gmx:780537 311.612