Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi67g00084 ATGGTCAAAGGTTTAATGATGTTCCAACAACAAGTGGTGGAAGAAAACATGTCAAATTTAACTTCTGCATCTGGTGAAGCTAGTGCTTCTTCTGGTAACAAAACTGAATTTGGAACAAGTTCTAGTTACCAACAACAACATCAACAACATCAACAGCAACAACACTTGGTTCCTCAAACTCAAACTCAATCTCAACCAATGAAGAAAAAGAGAAACCTCCCTGGTAACCCAGACCCTGAAGCTGAGGTAATAGCTATGTCACCGAAAAGTCTACTAGCGAAAAACCGATTCATATGTGAGATCTGCAACAAAGGCTTCCAACGAGATCAAAATCTTCAGCTTCACAGAAGAGGCCACAACTTACCATGGAAGTTGAAGCAAAGAACAAGCAAAGAAATCAGGAAGAAAGTGTATGTATGTCCAGAAACATCTTGTGTGCATCATGATCCATCAAGGGCTTTGGGAGATTTGACTGGAATCAAGAAGCACTTTTGCAGAAAACACGGTGAGAAGAAGTGGAAATGTGAAAAGTGTTCAAAGAAATACGCTGTTCAATCTGATTGGAAAGCTCATTCTAAAACATGTGGAACAAGAGAGTATAGATGTGACTGTGGAACTCTCTTCTCAAGGAGGGACAGTTTCATAACACATAGAGCATTCTGTGATGCATTAGCAGAAGAAAGTGCAAGAGTTATAACAAATAATACAATTCCGATTATACCCTCATCACAATCACCATCATCTTCTCATCATCCTCATCATCATCATCATCACATGATAAATCTACAAAATCAATTCAATAATCATAATCATAATCATAATCAACATCAAGAACAAGAGGTTCGTAATAATTTTCCATTATTGAAAAAAGAACAACAACAACAACAACATCAAAGTTTTGATCTTTCGGAAATTCCACCTTGGCTTGGCCCACCAAATGTTGGTGAAATCTCATCATCAATATTCTCTCAAACACAACAACAGCAACAACATCAAGAAAACCCTAACCCTAATCTTGTTCATGTTCATGGGCCCACATTGCCTCCTTACCAAACAGTACCTTCCCCACACATGTCAGCTACTGCATTATTGCAGAAAGCAGCTCAGATGGGTGCAACTATGAATAGAACAGGTTCTGCTTCTTCACCAGCTATGAATGCTATCAATGTTAGGTCCCACCAAGTTGATTCTCTCAACAATGTTTCTTCTGCTCATTTTGGTTTGAATCTGTTATCATCATCACGTGAACATGAACATCAACATGAACATGAACAACAACAAAACACAACAACAGCGACAACAACAGCAGCAACAGCAACAACATCGTCCTATCTTAGTAATATTCATGATGTTATGTTTTCATCTTCATCTCCTTCTGGATTTGAATCAACTCAGTTTGATGAAATGTTTGGTGGCATTATGAATCCAAAGAAAGATCATCATGAGAGACAGCCTAAAACAACGGCCGGTGATGACGGTGGTGGCGGAGGAGGTGGTGGAAATGAAGGATTGACTAGAGATTTCTTGGGTCTTAGGCCACTTTCTCATAGTGATATACTAAGCATGGCAGGGATTGGAAACTGCATGAATGATGAACAAAATCAGTCTCAAAAGCCACTATGGCAAGGTTAG 1632 0.3903 MVKGLMMFQQQVVEENMSNLTSASGEASASSGNKTEFGTSSSYQQQHQQHQQQQHLVPQTQTQSQPMKKKRNLPGNPDPEAEVIAMSPKSLLAKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPETSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARVITNNTIPIIPSSQSPSSSHHPHHHHHHMINLQNQFNNHNHNHNQHQEQEVRNNFPLLKKEQQQQQHQSFDLSEIPPWLGPPNVGEISSSIFSQTQQQQQHQENPNPNLVHVHGPTLPPYQTVPSPHMSATALLQKAAQMGATMNRTGSASSPAMNAINVRSHQVDSLNNVSSAHFGLNLLSSSREHEHQHEHEQQQNTTTATTTAATATTSSYLSNIHDVMFSSSSPSGFESTQFDEMFGGIMNPKKDHHERQPKTTAGDDGGGGGGGGNEGLTRDFLGLRPLSHSDILSMAGIGNCMNDEQNQSQKPLWQG 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi67g00084 543 MobiDBLite consensus disorder prediction 473 488 - -
Vivi67g00084 543 Pfam Zinc-finger double-stranded RNA-binding 97 119 IPR022755 -
Vivi67g00084 543 MobiDBLite consensus disorder prediction 470 508 - -
Vivi67g00084 543 Coils Coil 259 279 - -
Vivi67g00084 543 FunFam protein indeterminate-domain 5, chloroplastic-like 151 230 - -
Vivi67g00084 543 SMART c2h2final6 97 119 IPR013087 -
Vivi67g00084 543 SMART c2h2final6 138 168 IPR013087 -
Vivi67g00084 543 SMART c2h2final6 173 193 IPR013087 -
Vivi67g00084 543 SUPERFAMILY beta-beta-alpha zinc fingers 96 193 IPR036236 -
Vivi67g00084 543 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Vivi67g00084 543 Gene3D Classic Zinc Finger 94 194 - -
Vivi67g00084 543 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 119 IPR013087 -
Vivi67g00084 543 MobiDBLite consensus disorder prediction 19 70 - -
Vivi67g00084 543 MobiDBLite consensus disorder prediction 19 82 - -
Vivi67g00084 543 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 44 531 IPR031140 -
Vivi67g00084 543 MobiDBLite consensus disorder prediction 415 437 - -
Vivi67g00084 543 FunFam protein indeterminate-domain 12-like 76 144 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi67g00084 13 377 IDZ Gene Family AT1G55110 58.424 6.07e-127 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi67g00084 zf-C2H2_jaz 8.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi67g00084 K25870 - gmx:100785687 561.992