Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi67g00083 ATGGTCAAAGGTTTAATGATGTTCCAACAACAAGTGGTGGAAGAAAACATGTCAAATTTAACTTCTGCATCTGGTGAAGCTAGTGCTTCTTCTGGTAACAAAACTGAATTTGGAACAAGTTCTAGTTACCAACAACAACATCAACAACATCAACAGCAACAACACTTGGTTCCTCAAACTCAAACTCAATCTCAACCAATGAAGAAAAAGAGAAACCTCCCTGGTAACCCAGGTTTGTTTTTATCATCTTTTTTTTCTTTCAAATTTCATATTCATATTCAAAATCAAAACTTTTATAAATTTGATGAACATGGTTGTGTTAATTTTTCAGACCCTGAAGCTGAGGTAATAGCTATGTCACCGAAAAGTCTACTAGCGAAAAACCGATTCATATGTGAGATCTGCAACAAAGGCTTCCAACGAGATCAAAATCTTCAGCTTCACAGAAGAGGCCACAACTTACCATGGAAGTTGAAGCAAAGAACAAGCAAAGAAATCAGGAAGAAAGTGTATGTATGTCCAGAAACATCTTGTGTGCATCATGATCCATCAAGGGCTTTGGGAGATTTGACTGGAATCAAGAAGCACTTTTGCAGAAAACACGGTGAGAAGAAGTGGAAATGTGAAAAGTGTTCAAAGAAATACGCTGTTCAATCTGATTGGAAAGCTCATTCTAAAACATGTGGAACAAGAGAGTATAGATGTGACTGTGGAACTCTCTTCTCAAGGAGGGACAGTTTCATAACACATAGAGCATTCTGTGATGCATTAGCAGAAGAAAGTGCAAGAGTTATAACAAATAATACAATTCCGATTATACCCTCATCACAATCACCATCATCTTCTCATCATCCTCATCATCATCATCATCACATGATAAATCTACAAAATCAATTCAATAATCATAATCATAATCATAATCAACATCAAGAACAAGAGGTTCGTAATAATTTTCCATTATTGAAAAAAGAACAACAACAACAACAACATCAAAGTTTTGATCTTTCGGAAATTCCACCTTGGCTTGGCCCACCAAATGTTGGTGAAATCTCATCATCAATATTCTCTCAAACACAACAACAGCAACAACATCAAGAAAACCCTAACCCTAATCTTGTTCATGTTCATGGGCCCACATTGCCTCCTTACCAAACAGTACCTTCCCCACACATGTCAGCTACTGCATTATTGCAGAAAGCAGCTCAGATGGGTGCAACTATGAATAGAACAGGTTCTGCTTCTTCACCAGCTATGAATGCTATCAATGTTAGGTCCCACCAAGTTGATTCTCTCAACAATGTTTCTTCTGCTCATTTTGGTTTGAATCTGTTATCATCATCACGTGAACATGAACATCAACATGAACATGAACAACAACAAAACACAACAACAGCGACAACAACAGCAGCAACAGCAACAACATCGTCCTATCTTAGTAATATTCATGATGTTATGTTTTCATCTTCATCTCCTTCTGGATTTGAATCAACTCAGTTTGATGAAATGTTTGGTGGCATTATGAATCCAAAGAAAGATCATCATGAGAGACAGCCTAAAACAACGGCCGGTGATGACGGTGGTGGCGGAGGAGGTGGTGGAAATGAAGGATTGACTAGAGATTTCTTGGGTCTTAGGCCACTTTCTCATAGTGATATACTAAGCATGGCAGGGATTGGAAACTGCATGAATGATGAACAAAATCAGTCTCAAAAGCCACTATGGCAAGGTTAG 1731 0.3795 MVKGLMMFQQQVVEENMSNLTSASGEASASSGNKTEFGTSSSYQQQHQQHQQQQHLVPQTQTQSQPMKKKRNLPGNPGLFLSSFFSFKFHIHIQNQNFYKFDEHGCVNFSDPEAEVIAMSPKSLLAKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPETSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARVITNNTIPIIPSSQSPSSSHHPHHHHHHMINLQNQFNNHNHNHNQHQEQEVRNNFPLLKKEQQQQQHQSFDLSEIPPWLGPPNVGEISSSIFSQTQQQQQHQENPNPNLVHVHGPTLPPYQTVPSPHMSATALLQKAAQMGATMNRTGSASSPAMNAINVRSHQVDSLNNVSSAHFGLNLLSSSREHEHQHEHEQQQNTTTATTTAATATTSSYLSNIHDVMFSSSSPSGFESTQFDEMFGGIMNPKKDHHERQPKTTAGDDGGGGGGGGNEGLTRDFLGLRPLSHSDILSMAGIGNCMNDEQNQSQKPLWQG 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi67g00083 576 MobiDBLite consensus disorder prediction 503 541 - -
Vivi67g00083 576 Pfam Zinc-finger double-stranded RNA-binding 130 152 IPR022755 -
Vivi67g00083 576 ProSiteProfiles Zinc finger C2H2 type domain profile. 130 152 IPR013087 -
Vivi67g00083 576 MobiDBLite consensus disorder prediction 506 521 - -
Vivi67g00083 576 MobiDBLite consensus disorder prediction 448 470 - -
Vivi67g00083 576 Gene3D Classic Zinc Finger 127 227 - -
Vivi67g00083 576 FunFam protein indeterminate-domain 5, chloroplastic-like 184 263 - -
Vivi67g00083 576 ProSitePatterns Zinc finger C2H2 type domain signature. 132 152 IPR013087 -
Vivi67g00083 576 MobiDBLite consensus disorder prediction 19 73 - -
Vivi67g00083 576 FunFam protein indeterminate-domain 12-like 109 177 - -
Vivi67g00083 576 Coils Coil 292 312 - -
Vivi67g00083 576 MobiDBLite consensus disorder prediction 19 70 - -
Vivi67g00083 576 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 44 564 IPR031140 -
Vivi67g00083 576 SMART c2h2final6 171 201 IPR013087 -
Vivi67g00083 576 SMART c2h2final6 206 226 IPR013087 -
Vivi67g00083 576 SMART c2h2final6 130 152 IPR013087 -
Vivi67g00083 576 SUPERFAMILY beta-beta-alpha zinc fingers 129 226 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi67g00083 13 410 IDZ Gene Family AT1G55110 53.616 9.72e-120 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi67g00083 zf-C2H2_jaz 8.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi67g00083 K25870 - gmx:100785687 545.043