Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi679g00011 ATGATATCAAAAAGAGGCATTAATGGGATGGAAGTCCCTAAAAAAAGGACTGGCCTTGTGTTTAGAGAGACTGCTACTGCTAATGCCAGAGACGATCAAAATCGGGATCGCGCACGAGAGGGTTTCAGTAATGCACCCAACCCTCCTGTTCAGAAAAGATCTTCTGAAAAAGCTAAAGTTTTGAGGCCATCAATACAGTCGTCTTTGAGTGGCAAGGAGGTAGTTGGTAGTTCTCGGAGCCGTAGAACATCTGCTAACCCGGTTAAACCACTAAATGAGCCTCGGAGAATATTATCTTCGGGTGGTCTTCCAGCTGAAAAGGAAGGTAGTGTGATTCGGGCAGAAGCAGGAAAATCTGGTGCAGTATCGAATTTAAGATCTCAAAGGAGTTTTAATCAAAGACCTGGATTGCGTCAACGAGAAACTGAAAGCATTGGTCCGGCTACACGAGCAGTTTCTAGCAAGTATGGATTGAGGAACCTCAGATGCAACACTGTAACTGATGTCATCCCTTCTTCCTGCTCATCATCAGATTCTAGTTCTACCCTTAATAGAAGTAAGACTATTGTGACAAAAATGAGAAGCTCTGAAGGGGAAAGTAGCTCCACTCTTAAAGGGAAGAAGGTGACCGGGTCTTCATTGGAAAGTAGCTCCACTCTTAAAGGGAAGAAGGTGACCGGGTCTTCATTGGAAAGATTGAATTCTGGCACCAGAAATGGCAGACCTAGTTCTGAAACAAGAGGGTCTAGAAATATTCCTCCTCTGAGGGACAATAGCAGAGCATCAGTTAGAACTGAAAGAACGGTTAGTGGTTATGCCCGGGGAAGATTTTCTAACCAAGGAAATGAAAACTCCAAAGAAAACAATGGGGGCAATAGCAGAGCATCAGTGAAAACTGAAAGAACGGTTCGTGGTTATGGCAGGGGAAGATTTTCTAAACAAGGAAATGAAAACTCAAAAGAAAAGAATGAGTCCCGTGATGTGTTGCCTAATTCTCCTCATTCTATTGATATTAACTCTCCTGTCACTGAGGAGTTTCGTGGTGTTATGCCTATGTCTCATGAAGAACATGATACCCGTCATTCTCTAATAATTCAGGATGGCTTTCGGCGGCGCCACAATATGGATGGTATTTCTGAGGTATTATTGGCACTTGAGAGAATGGAACAAAATGAAGAGTTGACCCATGAGCAAATTGATTTACTAGAGACCAACTCTATTCTTGATGGACTTAGCTTCTATGATACTCATAGAGACATGCGGCTGGATATTGATGACATGTCATACGAGGAACTCTTAGCTCTCGAAGAGAGAATGGGTACAGTTAGTACAGCACTGTCAGAGGAAGCACTCTCTAATAGTGTTAAAAAAAGTGTCTATGAGTCTACGCCTTCGGATGATGCAGCCGACTGTGTTGATGAGGATAACAATGAAATCAAATGCTGCATTTGCCAGGAGGAATATGTTGTTGGAGATGAAATCGGAAGACTGCAATGCACGCATAAATATCATGTTGATTGTATACAGGAATGGTTGAGGCTGAAGAATTGGTGCCCTATGTGCAAAGAGTCAGCTGCACTGTCCAACTCGTCGTCATCATCATCTCATTAG 1611 0.4295 MISKRGINGMEVPKKRTGLVFRETATANARDDQNRDRAREGFSNAPNPPVQKRSSEKAKVLRPSIQSSLSGKEVVGSSRSRRTSANPVKPLNEPRRILSSGGLPAEKEGSVIRAEAGKSGAVSNLRSQRSFNQRPGLRQRETESIGPATRAVSSKYGLRNLRCNTVTDVIPSSCSSSDSSSTLNRSKTIVTKMRSSEGESSSTLKGKKVTGSSLESSSTLKGKKVTGSSLERLNSGTRNGRPSSETRGSRNIPPLRDNSRASVRTERTVSGYARGRFSNQGNENSKENNGGNSRASVKTERTVRGYGRGRFSKQGNENSKEKNESRDVLPNSPHSIDINSPVTEEFRGVMPMSHEEHDTRHSLIIQDGFRRRHNMDGISEVLLALERMEQNEELTHEQIDLLETNSILDGLSFYDTHRDMRLDIDDMSYEELLALEERMGTVSTALSEEALSNSVKKSVYESTPSDDAADCVDEDNNEIKCCICQEEYVVGDEIGRLQCTHKYHVDCIQEWLRLKNWCPMCKESAALSNSSSSSSH 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi679g00011 536 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 442 526 IPR013083 -
Vivi679g00011 536 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 79 526 IPR045191 GO:0061630
Vivi679g00011 536 SMART ring_2 481 521 IPR001841 -
Vivi679g00011 536 MobiDBLite consensus disorder prediction 1 106 - -
Vivi679g00011 536 MobiDBLite consensus disorder prediction 121 139 - -
Vivi679g00011 536 SUPERFAMILY RING/U-box 476 525 - -
Vivi679g00011 536 MobiDBLite consensus disorder prediction 168 342 - -
Vivi679g00011 536 Coils Coil 385 405 - -
Vivi679g00011 536 MobiDBLite consensus disorder prediction 60 87 - -
Vivi679g00011 536 ProSiteProfiles Zinc finger RING-type profile. 481 522 IPR001841 -
Vivi679g00011 536 MobiDBLite consensus disorder prediction 168 258 - -
Vivi679g00011 536 MobiDBLite consensus disorder prediction 118 150 - -
Vivi679g00011 536 Pfam Ring finger domain 480 522 IPR001841 -
Vivi679g00011 536 MobiDBLite consensus disorder prediction 314 328 - -
Vivi679g00011 536 MobiDBLite consensus disorder prediction 272 299 - -
Vivi679g00011 536 FunFam E3 ubiquitin-protein ligase arkadia 443 527 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi679g00011 378 525 C3H Transcription Factor Family AT2G15530 45.638 1.96e-36 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi679g00011 - - vvo:131644867 939.488