Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi679g00010 ATGATATCAAAAAGAGGCATTAATGGGATGGAAGTCCCTAAAAAAAGGACTGGCCTTGTGTTTAGAGAGACTGCTACTGCTAATGCCAGAGACGATCAAAATCGGGATCGCGCACGAGAGGGTTTCAGTAATGCACCCAACCCTCCTGTTCAGAAAAGATCTTCTGAAAAAGCTAAAGTTTTGAGGCCATCAATACAGTCGTCTTTGAGTGGCAAGGAGGTAGTTGGTAGTTCTCGGAGCCGTAGAACATCTGCTAACCCGGTTAAACCACTAAATGAGCCTCGGAGAATATTATCTTCGGGTGGTCTTCCAGCTGAAAAGGAAGGTAGTGTGATTCGGGCAGAAGCAGGAAAATCTGGTGCAGTATCGAATTTAAGATCTCAAAGGAGTTTTAATCAAAGACCTGGATTGCGTCAACGAGAAACTGAAAGCATTGGTCCGGCTACACGAGCAGTTTCTAGCAAGTATGGATTGAGGAACCTCAGATGCAACACTGTAACTGATGTCATCCCTTCTTCCTGCTCATCATCAGATTCTAGTTCTACCCTTAATAGAAGTAAGACTATTGTGACAAAAATGAGAAGCTCTGAAGGGGAAAGTAGCTCCACTCTTAAAGGGAAGAAGGTGACCGGGTCTTCATTGGAAAGATTGAATTCTGGCACCAGAAATGGCAGACCTAGTTCTGAAACAAGAGGGTCTAGAAATATTCCTCCTCTGAGGGACAATAGCAGAGCATCAGTTAGAACTGAAAGAACGGTTAGTGGTTATGCCCGGGGAAGATTTTCTAACCAAGGAAATGAAAACTCCAAAGAAAACAATGGGGGCAATAGCAGAGCATCAGTGAAAACTGAAAGAACGGTTCGTGGTTATGGCAGGGGAAGATTTTCTAAACAAGGAAATGAAAACTCAAAAGAAAAGAATGAGTCCCGTGATGTGTTGCCTAATTCTCCTCATTCTATTGATATTAACTCTCCTGTCACTGAGGAGTTTCGTGGTGTTATGCCTATGTCTCATGAAGAACATGATACCCGTCATTCTCTAATAATTCAGGATGGCTTTCGGCGGCGCCACAATATGGATGGTATTTCTGAGGTATTATTGGCACTTGAGAGAATGGAACAAAATGAAGAGTTGACCCATGAGCAAATTGATTTACTAGAGACCAACTCTATTCTTGATGGACTTAGCTTCTATGATACTCATAGAGACATGCGGCTGGATATTGATGACATGTCATACGAGGAACTCTTAGCTCTCGAAGAGAGAATGGGTACAGTTAGTACAGCACTGTCAGAGGAAGCACTCTCTAATAGTGTTAAAAAAAGTGTCTATGAGTCTACGCCTTCGGATGATGCAGCCGACTGTGTTGATGAGGATAACAATGAAATCAAATGCTGCATTTGCCAGGAGGAATATGTTGTTGGAGATGAAATCGGAAGACTGCAATGCACGCATAAATATCATGTTGATTGTATACAGGAATGGTTGAGGCTGAAGAATTGGTGCCCTATGTGCAAAGAGTCAGCTGCACTGTCCAACTCGTCGTCATCATCATCTCATTAG 1563 0.428 MISKRGINGMEVPKKRTGLVFRETATANARDDQNRDRAREGFSNAPNPPVQKRSSEKAKVLRPSIQSSLSGKEVVGSSRSRRTSANPVKPLNEPRRILSSGGLPAEKEGSVIRAEAGKSGAVSNLRSQRSFNQRPGLRQRETESIGPATRAVSSKYGLRNLRCNTVTDVIPSSCSSSDSSSTLNRSKTIVTKMRSSEGESSSTLKGKKVTGSSLERLNSGTRNGRPSSETRGSRNIPPLRDNSRASVRTERTVSGYARGRFSNQGNENSKENNGGNSRASVKTERTVRGYGRGRFSKQGNENSKEKNESRDVLPNSPHSIDINSPVTEEFRGVMPMSHEEHDTRHSLIIQDGFRRRHNMDGISEVLLALERMEQNEELTHEQIDLLETNSILDGLSFYDTHRDMRLDIDDMSYEELLALEERMGTVSTALSEEALSNSVKKSVYESTPSDDAADCVDEDNNEIKCCICQEEYVVGDEIGRLQCTHKYHVDCIQEWLRLKNWCPMCKESAALSNSSSSSSH 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi679g00010 520 Pfam Ring finger domain 464 506 IPR001841 -
Vivi679g00010 520 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 53 510 IPR045191 GO:0061630
Vivi679g00010 520 MobiDBLite consensus disorder prediction 168 326 - -
Vivi679g00010 520 MobiDBLite consensus disorder prediction 1 150 - -
Vivi679g00010 520 MobiDBLite consensus disorder prediction 121 139 - -
Vivi679g00010 520 SUPERFAMILY RING/U-box 460 509 - -
Vivi679g00010 520 MobiDBLite consensus disorder prediction 168 242 - -
Vivi679g00010 520 FunFam E3 ubiquitin-protein ligase arkadia 427 511 - -
Vivi679g00010 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 426 510 IPR013083 -
Vivi679g00010 520 ProSiteProfiles Zinc finger RING-type profile. 465 506 IPR001841 -
Vivi679g00010 520 Coils Coil 369 389 - -
Vivi679g00010 520 MobiDBLite consensus disorder prediction 60 87 - -
Vivi679g00010 520 MobiDBLite consensus disorder prediction 298 312 - -
Vivi679g00010 520 SMART ring_2 465 505 IPR001841 -
Vivi679g00010 520 MobiDBLite consensus disorder prediction 256 283 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi679g00010 362 509 C3H Transcription Factor Family AT2G15530 45.638 2.16e-36 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi679g00010 - - vvo:131644867 900.582