Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi678g00008 ATGGCCCAACAGTCATCCAGGCTTCAGCGCTTGCTTACTCTCTTGGACACTGGATCAACCCAAGCAACAAGGTTGACTGCTGCCCGACAGATAGGGGAGATTGCGAAGTTGCACCCTCAAGACTTGACCAGTCTTCTTAAGAAGGTTTCTCAATATCTGCGCAGTAAAAAATGGGATACAAGAGTTGCAGCGGCTCATGCAATTGGGTCTATTGCTGAGAATGTTAAGCACTTAAGCTTGAATGAACTTATTGCTTCTGTTGTAACAAAAATGTCTGAGAGCGGGATATCATGCAGTGTTGAGGATCTGTGTGCATGGCCTTATTTACAAGCCAAAATTACAGGAAGCTCATTTAGAAGTTTTGATTTGAATAAGGTGCTTGAATTTGGAGCTTTATTAGCATCAGGAGGGCAGGAGTACGATATTGGAAGCGATAATATAAAGAACCCAAGGGAGCGTTTGGTTCGCCAAAAGCAAAATCTCCGACGCCGTTTGGGTTTAGATGTCTGCGAACAATTTATGGATATCAATGATGTAATAAGAGATGAAGATCTTTTGGCACACAAATCAGACTCGTATCTCAATGGCACAGATCATAAAGTTTTTACATCTTGTTCTGTACATAACATTCAGAAAATGGTTGCAAATATGGTTCCTAGTGTCAAATCAAAGTGGCCGAGTGCTAGAGAACTGAATCTTTTAAAGCGCAAAGCAAAAAATACCTCAAAGGACCAAGCGAAGAGCTGGTGCGAAGATGGAACAGAGGCTTCAGGCACTCAAAATTTGACTTCAAAAGGCACGTGTCCTGATTCGGTAAATTATAGTAAGGCATTCACACAAGTTAATCATGACGAATACGGATTTGAGCATGAAGAAGATGGACAATGGCCTTTCAGTACATTTGTCGAGCAACTTATTATTGATATGTTTGATCCTGTTTGGGAGGTACGGCATGGTAGCGTGATGGCATTGAGAGAGATTTTAACACACCAAGGTGCTTCTGCTGGAGTGTTGAAACACGACCCACCCTTGGGTGGGACCTCATTTGTGGAATTAGAAAACAAAAATACATCAAATATGTTGAAGAGAGAAAGGGATATTGATTTAAATATGCAAGTTTCAGCAGATGATTGTGTCTTGAACTTGAAGAAGCCAAAACTTGAAGATGTCTCTTTATCAACATCTATGGATAGCGTGATGGTTTGCAGTAACGGAGGTGATACTGAAAACATAATTAGTTCTGAAACACATGGATGCACTGTACCTCTGGACTATGGAAATGGGAAATTTGATGGTAGTTCTGTTGACATGAATGTGGAAACTCACTATGATGATTTACATGACGCACGCAAGGAACCTGCTAATATAGCAGACCAGAAAGGTTATTCTGATGACCAAAAGATTCTCTCTGAAAACCCTAATATGCTGAGAAATCTCCCTCAGAATTGCGAGCTGATGAACTCCGTCAAAGTGGCTAGAAATTCATGGCTTCGAAACTGCGACTTTCTTCATGACTGTGTCATACGCTTTTTGTGTGTATTGTCACTTGACCGCTTTGGAGATTATGTATCTGATCAGGTTGTTGCGCCAGTGCGTGAAACCTGTGCACAGGCATTGGGGGCTGCATTTAAATATATGCATGCAGCACTAGTAAATGAAACATTGAACATATTGTTGAAAATGCAGTGTAGTCCAGAATGGGAGATTCGTCATGGCAGTCTTCTGGGTATCAAATATTTGGTTGCTGTGCGGCAGGAGATGCTTTCCGATTTGCTTGGACGTGTTCTTCCTGCATGTAAATCTGGGTTGGAGGACCCCGATGATGATGTCCGAGCAGTTGCTGCTGATGCTTTAATACCAGCTGCAGCTGCAATTGTTGCTTTGCAGGGTCAAACACTACATTCAATTGTGATGCTATTATGGGATATATTGCTTGATTTGGATGATTTAAGTCCGTCCACTAGCAGTGTAATGAATCTGCTTGCAGAGATCTACTCTCATGAAGAGATGGTCCCAAAGATGTATAAAGTTTTTAAATTGGAAGACAAGGAAATTGAAAATGGAGCTGGTGCTTGTGGTGATGACGTGGAAGAAAATCCTTTTGTACTTTCAGCTCTGGCTCCGCGTTTGTGGCCCTTTATGAGGCATAGTATCACATCTGTCCGTTATTCAGCAATACGAACTCTGGAAAGGCTACTTGAAGCTGGATATAAGAGAAGCATGTCTGAGCTTTCTAGTACTTCATTTTGGCCCTCTTCTATATTTGGAGATACCCTTAGAATTGTCTTTCAGAATTTACTATTGGAAACAAATGAAGAGGTTTTGCAATGTTCTGAGAGAGTTTGGAGTCTCCTTGTTCAGTGTTCTGTGGAGGACCTGGAGACAGCTGGAATGTCTTACATGACTTCCTGGATAGAACTTGCATCTACACCTTTTGGTTCTGCTTTAGATGCCTCAAAGATGTTTTGGCCTGTTGCCTTTCCACGAAAAAGTCAATTTAGAGCCGCAGCTAAAATGAGAGCTGTGAGGATTGAAAATGAATATAGCGGAAATCTTGGCGTTGAATCTACAATATCAACTATTCCTCAGGATAGAAATGGAGATGTTCCTACGAATTCTGTTAAGATAATTGTTGGTGCTGAGGTCGACACTTCTGTAACTCGTACCCGGGTAGTTACGGCAACTGCTTTGGGAATTTTTGCCTCTAAACTTCCAGAGGGTTCTTTAAAAAATGTTATTGATCCACTGTGGAGTTCAATAACCTCTCTTTCTGGTGTTCAGCGCCAGGTAGCATCTATGATTCTTATTTCTTGGTTCAAGGAGGTTAGGACCAGGAATTTGTCTGAAAGCCTCAATGGTATTCCTGCTTCCCTCAAAGATTGGTTGCTGGACTTATTAGCATGTTCTGACCCTGCGTTCCCAACAAAAGGTTCACTTATTCCTTATGCTGAGCTTTCAAGAACTTATTCGAAGATGCGAAGTGAGGCTGGTCAATTGCTAAATGCAGTCAAATCTTCTGGTATGTTTAGCGAGATATTGACAACAACCAATATAGAGTTGGATAACTTGAGTGTAGATGATGCCATTGGTTTTGCATCAAAAATTCCATCATCGTGTAATGATAGTCCTGCAAATGAGTCTTCGAGAAAGAACACAATGGATGATATTGAATCCTCAAAACAGAGGCTTTTGACAACTTCTGGCTATTTGAAATGTGTTCAGAGTAATTTGCATGTTACGGTTACATCTGCAGTTGCAGCTGCAGTCGTGTGGATGTCTGAGTTTCCTACCCGGCTCACCCCCATCATTTTGCCTTTGATGGCTTCGATCAGACGGGAACAGGAGGAAATACTGCAAATTAAGTCAGCCGAGGCTCTTGCTGAGCTAATATATCACTGTGTTTCACGGAGACCTTGCCCCAACGATAAATTAATTAAGAATATATGTAGTTTGACTTGCATGGATCCCTCTGAGACCCCTCAAGCTAAATCCATTTGTTCCATCGAGAATATTGATGACCAAGGTCTTCTGTCTTTCAGAACTCCTGTGACTAAACAGAAGTCAAAGGTGCATGTGCTGACTGGTGAGGATCGATCAAAGGTAGAGGGGTTTATAAGTAGACGGGGATCTGAGCTATCATTGAGGCTTCTGTGTGAAAAGTTCGGTGTTTTGCTCTTTGATAAGCTTCCTAAGCTGTGGGATTGTCTTACTGAGGTTCTTAAGCCAAGCTCCTCCGAATCTCTAATTGCCGCTGATGAAAAGCAAGCTACGGTAGCAATTGAGTCTGTTAGTGATCCTCAGACCTTGATTAACAATATCCAGGTCGTGCGTTCTATTGCTCCCTTGTTAAGTGAGGAGTTGAAGCCAAAACTTTTGACACTTCTTCCATCCGTTTTTAAATGTGTGAAGCATTCTCATGTGGCAGTTAGATTAGCTGCTTCACGCTGCATCACTTCCATGGCTCAGTCAATGATTGTGAAAGTCATGGGAGCTGTGGTTGAAAATGCTATCCCTATGCTGGAAGATGCATCGTCAGTTCATGCTCGACAAGGAGCAGGCATGTTGATTAGCTTTCTTGTTCAGGGGCTTGGTGTAGAGTTGGTACCTTATGCTCCTCTGCTGGTGGTTCCCCTTTTACGATGCATGAGTGATTGTGATCAGTCTGTCAGACAGAGTGTGACCCATAGCTTTGCTGCTCTTGTACCTTTACTTCCTTTAGCACGCGGTGTTCCTCAACCAATTGGAATAGGGGAAGGTATATCTAAAAATGCAGAAGATTTGCGTTTTCTGGAACAGCTACTTGACAACTCTCATATTGAAGATTACAAGTTGTGCACTGAATTGAAAGTAACATTGAGAAGATATCAACAGGAAGGCATAAATTGGTTAGCTTTTCTGAAACGTTTTAAACTTCATGGAATTTTATGTGATGACATGGGGCTTGGTAAGACACTTCAAGCATCGGCAATTGTGGCCTCTGATATAGTTGAGCATCAAACTCAAATTGCCAATGAGGATCTTTTGCCATCTTTAATTATTTGCCCGTCAACACTAGTTGGACATTGGGCCTTTGAGATAGAAAAGTATATTGATGCTTCAGTTATATCTAGCCTTCAGTATGCTGGTTCTGCTCAGGATCGAATGCTTCTTCGAGAGAGTTTTTGCAAGCATAATGTTGTTATAACATCATATGATGTTGTCCGGAAAGATATTGATTATTTGGGACAGCAGCTGTGGAACTACTGTATTTTAGATGAAGGACATATAATAAAGAATGCTAAGTCTAAAGTTACTCTTGCTGTAAAGCAGTTGAAAGCCCAACACCGCTTGATATTGAGTGGGACACCAATACAGAATAACATAATGGACTTGTGGTCCCTTTTTGATTTTTTGATGCCTGGGTTTCTTGGAACAGATAGACAGTTCCAAAGCACATATGGAAAACCCCTAGTAGCTGCAAGAGATCCAAAGTGCTCTGCCAAGGATGCTGAAGCCGGAGCACTTGCTATGGAAGCATTGCATAAGCAGGTCATGCCTTTCCTCCTTCGTAGGACAAAGGATGAAGTCTTGTCTGATCTGCCAGAGAAAATAATTCAAGACAGATACTGCGATTTGAGCACTGTACAACTTAAACTTTACGAACAGTTTTCTGGTTCTCGTGCAAAACAAGAAATGTCATCGATTGTAACAACAGATGAGTCAGCTGCAGCTGAAGGAAGTAGCAGTTCTACTAAAGCGTCTTCACATGTTTTCCAGGCACTCCAATACTTGCTAAAACTCTGTAGTCATCCATTGCTTGTAATTGGTGGGAAGATTCCAGATTCACTCTCTACCATCCTTTTGGAACTGTTTCCTGCGGGCTCTGATGTCATTTCAGAACTTCACAAACTCCATCACTCTCCAAAATTAGTTGCTCTTCATGAGATTCTCGAAGAGTGTGGAATTGGAATTGATGCTTCAGGTTCTGAGGCTGCTGCTGGCATTGGGCAGCATAGGGTTTTGATATTTGCTCAACATAAGGCGTTCTTGGATATAATTGAAAAAGATTTGTTTCAGACACACATGAAAAATGTCACATATTTACGGCTAGACGGATCAGTTGAGACCGATAAGCGGTTTGAAATTGTAAAAGCTTTCAATTCAGATCCTACCATTGATGTCTTATTGCTTACAACTCACGTGGGCGGGCTTGGTTTGAACCTTACATCTGCAGATACCCTTGTATTTGTGGAGCATGACTGGAATCCTATGCGCGATCTTCAGGCTATGGATAGAGCGCACAGGTTAGGTCAGAAGAAAGTAGTTAATGTTCACCGTCTGATAATGCGTGGTACTTTGGAAGAGAAAGTTATGAGTTTACAAAAGTTTAAAGTGTCAGTGGCTAATGCTGTCATTAATGCGGAGAATGCTAGTTTGAAAACAATGAATACAGATCAGCTGCTTGATTTATTTGCATCAGCAGAAATCCCAAAGAAGGGGTCTTCTGCCGTGAAGAGTTCAGAAGACAACACCGATGGAGAAATAGGCAGTGGAAAGGGATTGAAAGCAATACTTGGGGGATTAGAGGATCTATGGGACCAATCACAATACACAGAGGAGTACAATTTGAGTCAATTTTTGGCAAAGCTTAATGGTTAA 6138 0.4161 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGEIAKLHPQDLTSLLKKVSQYLRSKKWDTRVAAAHAIGSIAENVKHLSLNELIASVVTKMSESGISCSVEDLCAWPYLQAKITGSSFRSFDLNKVLEFGALLASGGQEYDIGSDNIKNPRERLVRQKQNLRRRLGLDVCEQFMDINDVIRDEDLLAHKSDSYLNGTDHKVFTSCSVHNIQKMVANMVPSVKSKWPSARELNLLKRKAKNTSKDQAKSWCEDGTEASGTQNLTSKGTCPDSVNYSKAFTQVNHDEYGFEHEEDGQWPFSTFVEQLIIDMFDPVWEVRHGSVMALREILTHQGASAGVLKHDPPLGGTSFVELENKNTSNMLKRERDIDLNMQVSADDCVLNLKKPKLEDVSLSTSMDSVMVCSNGGDTENIISSETHGCTVPLDYGNGKFDGSSVDMNVETHYDDLHDARKEPANIADQKGYSDDQKILSENPNMLRNLPQNCELMNSVKVARNSWLRNCDFLHDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHAALVNETLNILLKMQCSPEWEIRHGSLLGIKYLVAVRQEMLSDLLGRVLPACKSGLEDPDDDVRAVAADALIPAAAAIVALQGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSHEEMVPKMYKVFKLEDKEIENGAGACGDDVEENPFVLSALAPRLWPFMRHSITSVRYSAIRTLERLLEAGYKRSMSELSSTSFWPSSIFGDTLRIVFQNLLLETNEEVLQCSERVWSLLVQCSVEDLETAGMSYMTSWIELASTPFGSALDASKMFWPVAFPRKSQFRAAAKMRAVRIENEYSGNLGVESTISTIPQDRNGDVPTNSVKIIVGAEVDTSVTRTRVVTATALGIFASKLPEGSLKNVIDPLWSSITSLSGVQRQVASMILISWFKEVRTRNLSESLNGIPASLKDWLLDLLACSDPAFPTKGSLIPYAELSRTYSKMRSEAGQLLNAVKSSGMFSEILTTTNIELDNLSVDDAIGFASKIPSSCNDSPANESSRKNTMDDIESSKQRLLTTSGYLKCVQSNLHVTVTSAVAAAVVWMSEFPTRLTPIILPLMASIRREQEEILQIKSAEALAELIYHCVSRRPCPNDKLIKNICSLTCMDPSETPQAKSICSIENIDDQGLLSFRTPVTKQKSKVHVLTGEDRSKVEGFISRRGSELSLRLLCEKFGVLLFDKLPKLWDCLTEVLKPSSSESLIAADEKQATVAIESVSDPQTLINNIQVVRSIAPLLSEELKPKLLTLLPSVFKCVKHSHVAVRLAASRCITSMAQSMIVKVMGAVVENAIPMLEDASSVHARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGVPQPIGIGEGISKNAEDLRFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIVEHQTQIANEDLLPSLIICPSTLVGHWAFEIEKYIDASVISSLQYAGSAQDRMLLRESFCKHNVVITSYDVVRKDIDYLGQQLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTDRQFQSTYGKPLVAARDPKCSAKDAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSTVQLKLYEQFSGSRAKQEMSSIVTTDESAAAEGSSSSTKASSHVFQALQYLLKLCSHPLLVIGGKIPDSLSTILLELFPAGSDVISELHKLHHSPKLVALHEILEECGIGIDASGSEAAAGIGQHRVLIFAQHKAFLDIIEKDLFQTHMKNVTYLRLDGSVETDKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDLQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQKFKVSVANAVINAENASLKTMNTDQLLDLFASAEIPKKGSSAVKSSEDNTDGEIGSGKGLKAILGGLEDLWDQSQYTEEYNLSQFLAKLNG 2045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi678g00008 2045 FunFam B-TFIID TATA-box-binding protein-associated factor 1 1422 1683 - -
Vivi678g00008 2045 Gene3D - 1694 2009 IPR027417 -
Vivi678g00008 2045 Gene3D - 508 689 IPR011989 -
Vivi678g00008 2045 Gene3D - 863 1410 IPR011989 -
Vivi678g00008 2045 FunFam TATA-binding protein-associated factor BTAF1 1199 1410 - -
Vivi678g00008 2045 FunFam TATA-binding protein-associated factor BTAF1 1 96 - -
Vivi678g00008 2045 CDD SF2_C_SNF 1799 1941 - -
Vivi678g00008 2045 Gene3D - 1425 1683 IPR038718 -
Vivi678g00008 2045 Gene3D - 4 94 IPR011989 -
Vivi678g00008 2045 Pfam Domain of unknown function (DUF3535) 781 1235 IPR022707 -
Vivi678g00008 2045 FunFam TATA-binding protein-associated factor BTAF1 507 687 - -
Vivi678g00008 2045 MobiDBLite consensus disorder prediction 244 266 - -
Vivi678g00008 2045 SUPERFAMILY ARM repeat 6 1493 IPR016024 -
Vivi678g00008 2045 SMART ultradead3 1448 1644 IPR014001 -
Vivi678g00008 2045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1430 1684 IPR027417 -
Vivi678g00008 2045 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1820 1980 IPR001650 -
Vivi678g00008 2045 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 4 2044 IPR044972 GO:0003677|GO:0016887|GO:0017025
Vivi678g00008 2045 SMART helicmild6 1844 1930 IPR001650 -
Vivi678g00008 2045 Pfam Helicase conserved C-terminal domain 1830 1930 IPR001650 -
Vivi678g00008 2045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1685 1986 IPR027417 -
Vivi678g00008 2045 CDD DEXHc_Mot1 1452 1684 IPR044078 GO:0005524
Vivi678g00008 2045 MobiDBLite consensus disorder prediction 252 266 - -
Vivi678g00008 2045 FunFam TATA-binding protein-associated factor 172 1694 2011 - -
Vivi678g00008 2045 Pfam SNF2-related domain 1470 1766 IPR000330 GO:0005524|GO:0140658
Vivi678g00008 2045 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1464 1634 IPR014001 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi678g00008 1447 1985 RAD5 or RAD16-like Gene Family AT1G02670 27.090 3.87e-41 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi678g00008 DUF3535 8.1e-103 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi678g00008 K15192 - gmx:100777977 3424.02