Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi678g00003 ATGGCCAACACTTCCAACTTCATTCACCTTTTCAACTTCATAGCAATTTTATCACTCATTTTCCCTCCTTGCAAATCTCAAACAACTGAAACACAAGCACTTCTCCAATTCAAAGATCATTTAATCGATTCGTCGAACACATTAGCTTCATGGAATAATACAAACACTCCATGCAACTTCCATGGCATCACATGTGATCCACCATCTTCCAAAGTCACAGAAATCTCCTTAGACGATAACTTGCTCTCAGGCGAAATTTTTCCATCAATCTCAATACTTCATAGCCTGCAAGTCCTTTCACTACCATCCAACTCCATTTCGGGGAAACTTCCGCCAGAAGTAACCGAATTCACACACCTCAGAGTTTTGAATTTATCCGGAAACGAACTGGTTGGTCCGATTCCGGATTTTTCTGGACTAAGAAGCCTCCGTGTTCTTGATCTCTCGGCGAACTTTTTCACCGGGAGAATCCCTGGCTGGATAGGGAATCTAACCGGACTTAATTCGCTTGGTCTCGGAGAAAATCTTTTTGCTGGAAGTATGATTCCAAAGAGTGTTGGGAGTTTGAAGAACTTGACATGGCTTTACCTTGGTGGTGCACATTTGGTTGGAGAGATTCCAGAATCAGTGTATGAAATGGAAGCACTAGAGACTTTGGATTTGTCAAGAAACAAGCTATCTGGAAACATCTCTAGATCGATTTCGAAGCTGAAGAATGTGTACAAAATCGAGTTGTTTTCGAACAATTTGACCGGCCGAATACCGGAAGAGCTTGCGAATTTAACCAATTTGCAAGAGATTGATATTTCTGCAAACAACCTGTTTGGTGAATTGCCTAAGAGAATTGGTGATATGGTGAATTTGGCTGTTTTTCAGCTCTATGATAACAACTTTTCTGGTGAGATTCCTGTTGGATTCGGTGATATGGAGAATCTCAGAGGCTTTTCGGTTTACAGAAACCGTTTCACCGGTTCGATTCCGGAGAATTTCGGCCGATTTTCTCCGCTCGAAAGCATCGACTTATCTGAGAATCAGTTTTCAGGTTTTTTCCCAAAGTACTTGTGTGAGAAGCAAAAGTTGAAACTTCTGCTTGCATTGCAAAACAATTTCACTGGTAATGTTTCTGAATCTTATGCTTCATGCAAATCATTAGAGAGATTGAGGATCAGTAGGAATATTTTGTCCGGAAAAATTCCGAACGGCGTTTGGTCGCTTCCGAATGCGAAGATAATTGATCTCGGGTTTAACAATTTCAGTGGTGAAGTTTCTTCACAGATTGGTAACTCAACAAATTTAACTGAGGTTGTTTTGATGAACAACAAGTTTTCTGGTAAGGTTCCGTCCGAAATCGGAAAATTGGTAAGTTTGGAGAAACTTTACTTGAGCAACAACAATTTCTCTGGTGAAATTCCACATGAAGTTGGATTATTGAAACAGTTATCCACTTTGCATTTGGAGGAAAATTCTTTAACTGGTTTAATACCTAAGGAGTTAGGCCAATGTTCAAGGCTTGTGGATTTGAATCTTGCATTGAATTCTCTGTCAGGAAGTATTCCGAGCTCGGTTTCGCTTATGAGTTCGTTGAACTCGTTGAATTTGTCTCGAAACAAGTTAACAGGTTCGATTCCTGATAATTTGGACAAAATGAAACTAAGTTCAATTGATTTTTCTGATAATCTGCTTTCTGGCGGAATTCCGTTCGGGATACTTGTTATCGGCGGAGAGAAAGCTTTTGCGGGAAACAAAGGTTTATGTGTTGACAAAATGCCGAGCAGTACGGTAAATTCTGTTTTGAAGGTTTGTGGTAATGATCGTGCTCGTAGAAGAGCTTTCTTTGGCTATAAATATATATTGCTCTTGGTCATTGCTGTTATCTTCCTCGCTGCGGTTTTGATCTGTCGAAGAATGAGGATTCGAAAAGCGAAAAAGATGCTAAAACGTCAGAAGGAAGCAAGTCAAAAGAAATGGAAGCAAGCATCTTTTCACAAAGTGGATATTGATGCTGATGAAATAGGTAACTTGGATGAAGATAATTTGATCGGCCACGGTGGTACGGGAAAGGTTTATCGAGTCGCGTTGAAGAAAAACGGAATGGTAGTGGCCGTGAAGCAGCTAGAGAATGGCGACGGCATGAGGATTTTGGTCGCGGAAATGGAGATTTTAGGGAAGATTAGGCATAGAAATATACTTAAACTTTATGCTTGTTTTCTCAAAGGAGGAACCAATCTTTTAGTTTTCGAGTATATGCCAAATGGTAATCTTTTCGAAGCTCTGCATAGAAATGTAAAAGATGAGAAGGTTGCATGGGATTGGAATCAGAGGTATAAAATCGCGTTGGGAGGTGCGAAAGGGATTTGCTATTTGCACCATGATTGTTGTCCATCTGTTATTCATAGGGATATAAAATCGAGCAACATCTTGCTTGATCAAGAATATGAAGCGAAAATTGCTGATTTTGGTGTTGCAAGGTTTGCCGAACAAACTCAGACGGGTCTTAGCTTTTTTGCTGGCACACATGGTTATATTGCTCCAGAACTCGCTTATTCAACTGAAGTAACTGACAAAAGCGATGTGTACAGCTTCGGAGTAGTACTGTTAGAGTTAGTATCTGGAAGAAAAGCTGTTGAAGAAGAATACGGAGAAGCAAAAGACATTGTTTTTTGGGTTCTGAGTAATCTGCATGAGCGCGAAAGTGTACTCAACATTCTTGATGCGAGAGTTGCATCAGCACATTGTGTCGAAGATATGATAAAAGTGTTGAAAATTGCTATCAAGTGCACAAACAAGCTTCCGACATTGCGTCCTACAATGAGAGATGTTGTTAAGATGCTTGTTGCTTCTGAACCTTCCAAGAAGAAAAATAAAAGACACGGTTTTGAGAAAGATTTAATGTCGAAAGATACAATTTGA 2910 0.3993 MANTSNFIHLFNFIAILSLIFPPCKSQTTETQALLQFKDHLIDSSNTLASWNNTNTPCNFHGITCDPPSSKVTEISLDDNLLSGEIFPSISILHSLQVLSLPSNSISGKLPPEVTEFTHLRVLNLSGNELVGPIPDFSGLRSLRVLDLSANFFTGRIPGWIGNLTGLNSLGLGENLFAGSMIPKSVGSLKNLTWLYLGGAHLVGEIPESVYEMEALETLDLSRNKLSGNISRSISKLKNVYKIELFSNNLTGRIPEELANLTNLQEIDISANNLFGELPKRIGDMVNLAVFQLYDNNFSGEIPVGFGDMENLRGFSVYRNRFTGSIPENFGRFSPLESIDLSENQFSGFFPKYLCEKQKLKLLLALQNNFTGNVSESYASCKSLERLRISRNILSGKIPNGVWSLPNAKIIDLGFNNFSGEVSSQIGNSTNLTEVVLMNNKFSGKVPSEIGKLVSLEKLYLSNNNFSGEIPHEVGLLKQLSTLHLEENSLTGLIPKELGQCSRLVDLNLALNSLSGSIPSSVSLMSSLNSLNLSRNKLTGSIPDNLDKMKLSSIDFSDNLLSGGIPFGILVIGGEKAFAGNKGLCVDKMPSSTVNSVLKVCGNDRARRRAFFGYKYILLLVIAVIFLAAVLICRRMRIRKAKKMLKRQKEASQKKWKQASFHKVDIDADEIGNLDEDNLIGHGGTGKVYRVALKKNGMVVAVKQLENGDGMRILVAEMEILGKIRHRNILKLYACFLKGGTNLLVFEYMPNGNLFEALHRNVKDEKVAWDWNQRYKIALGGAKGICYLHHDCCPSVIHRDIKSSNILLDQEYEAKIADFGVARFAEQTQTGLSFFAGTHGYIAPELAYSTEVTDKSDVYSFGVVLLELVSGRKAVEEEYGEAKDIVFWVLSNLHERESVLNILDARVASAHCVEDMIKVLKIAIKCTNKLPTLRPTMRDVVKMLVASEPSKKKNKRHGFEKDLMSKDTI 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi678g00003 969 Gene3D Phosphorylase Kinase; domain 1 634 748 - -
Vivi678g00003 969 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 749 961 - -
Vivi678g00003 969 Gene3D Transferase(Phosphotransferase) domain 1 749 967 - -
Vivi678g00003 969 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Vivi678g00003 969 SUPERFAMILY Protein kinase-like (PK-like) 670 944 IPR011009 -
Vivi678g00003 969 ProSitePatterns Protein kinases ATP-binding region signature. 680 703 IPR017441 GO:0005524
Vivi678g00003 969 Pfam Leucine Rich Repeat 216 237 IPR001611 GO:0005515
Vivi678g00003 969 Pfam Leucine Rich Repeat 119 140 IPR001611 GO:0005515
Vivi678g00003 969 Gene3D Ribonuclease Inhibitor 237 310 IPR032675 -
Vivi678g00003 969 Gene3D Ribonuclease Inhibitor 181 236 IPR032675 -
Vivi678g00003 969 PRINTS Leucine-rich repeat signature 525 538 - -
Vivi678g00003 969 PRINTS Leucine-rich repeat signature 216 229 - -
Vivi678g00003 969 FunFam Receptor-like protein kinase HSL1 287 593 - -
Vivi678g00003 969 ProSitePatterns Serine/Threonine protein kinases active-site signature. 796 808 IPR008271 GO:0004672|GO:0006468
Vivi678g00003 969 Gene3D Ribonuclease Inhibitor 26 180 IPR032675 -
Vivi678g00003 969 Pfam Leucine rich repeat 141 201 IPR001611 GO:0005515
Vivi678g00003 969 SMART LRR_typ_2 525 549 IPR003591 -
Vivi678g00003 969 SMART LRR_typ_2 453 476 IPR003591 -
Vivi678g00003 969 SMART LRR_typ_2 213 237 IPR003591 -
Vivi678g00003 969 SMART LRR_typ_2 477 501 IPR003591 -
Vivi678g00003 969 SMART LRR_typ_2 140 164 IPR003591 -
Vivi678g00003 969 SMART LRR_typ_2 93 117 IPR003591 -
Vivi678g00003 969 SMART LRR_typ_2 261 285 IPR003591 -
Vivi678g00003 969 SUPERFAMILY L domain-like 56 304 - -
Vivi678g00003 969 Pfam Protein kinase domain 676 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi678g00003 969 SMART serkin_6 674 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi678g00003 969 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 213 945 - -
Vivi678g00003 969 ProSiteProfiles Protein kinase domain profile. 674 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi678g00003 969 Gene3D Ribonuclease Inhibitor 311 595 IPR032675 -
Vivi678g00003 969 ProSiteProfiles Leucine-rich repeat profile. 119 141 IPR001611 GO:0005515
Vivi678g00003 969 FunFam Leucine-rich receptor-like protein kinase family protein 185 280 - -
Vivi678g00003 969 ProSiteProfiles Leucine-rich repeat profile. 455 477 IPR001611 GO:0005515
Vivi678g00003 969 FunFam Probable inactive receptor kinase RLK902 27 184 - -
Vivi678g00003 969 SUPERFAMILY RNI-like 243 563 - -
Vivi678g00003 969 MobiDBLite consensus disorder prediction 949 969 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi678g00003 15 949 Receptor kinase-like Gene Family AT1G72180 54.123 0.0 981
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi678g00003 Pkinase 4.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi678g00003 - - gmx:100789704 1254.2