Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi676g00004 ATGGCAGCTATGATGGATTTATACAGTAACACACAACTTCACATGGATCCTTATGCAGATCCGTTTAGAGGTGAATTAATGGAAGTTCTTGAACCTTTTATCAAAAGTCCTTCCCAAATTTCTACTACGTCACCATCACCTTCTTGTTCTTCTTATTCTCTCTCTGAACCTTCTCTCTCTTCTTTCCCTTCTTTCTACAATGATGGTTGTTCTACGAACTTCATAGGCTTTGTTCAACAACCATCTTCTACTCCTTCTTCTTCTCTTCTTGGTCTTAACCATTTGACCCCATCTCAAATCAACCAGATTCAATCACAAATCCAACTTCAAAACTTTACCTTGCAACAACATCAACAACAACAGCGTCTCAGTCTCAGTAACACTCTTAGCTTCCTCAGTCCGAAGCCGATCCCTATGAAGCACGTGGGCAGTACTCCTTCAAAGCCCACGAAGCTATACAGAGGGGTGAGGCAAAGGCACTGGGGAAAATGGGTTGCTGAGATCAGACTACCTAAGAACCGTACCAGGCTCTGGCTTGGTACGTTTGATACAGCAGAAGAAGCTGCTTTGGCTTATGATAAAGCTGCTTATAAGCTTCGTGGTGACTTCGCTAGGCTGAATTTCCCGAATCTGAAACACCAAGGTTCATGTATTGGCGTTGGTGGTGAGTTTGGTGAGTATAAGCCTCTTCCTTCTTCTGTTGATGCTAAACTTCAAGCTATTTGTGAAGGTTTAGCTGAGATGCAGAAACAGGGAAAGTCAGAGAAGCCTAAGAAAACACCAGCGGCTCGGTCCAAAGCTGTGTCGAAGGCGGTACCGGTACCGCCTTCGACGGTGGAGAAGTCTGTTGATGATTTGAACAAGGTTTCCGGTTCAGGTTCAGATTCAGGTTCAGAAGGGTGTTGTAAGGTTGAGGTTTCGCTTTCTCCGGTGATGACTGAGAGTGAAGGCTCTTCACCACTTTCTGATCTGACTTTTGGTGATGTTGGTGAGCCACAGTGGGAAGGTGATTCAGAAAATTTTAATTTGCTGAAGTACCCCTCTTATGAGATTGATTGGGATTCTCTGTGA 1071 0.4426 MAAMMDLYSNTQLHMDPYADPFRGELMEVLEPFIKSPSQISTTSPSPSCSSYSLSEPSLSSFPSFYNDGCSTNFIGFVQQPSSTPSSSLLGLNHLTPSQINQIQSQIQLQNFTLQQHQQQQRLSLSNTLSFLSPKPIPMKHVGSTPSKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLKHQGSCIGVGGEFGEYKPLPSSVDAKLQAICEGLAEMQKQGKSEKPKKTPAARSKAVSKAVPVPPSTVEKSVDDLNKVSGSGSDSGSEGCCKVEVSLSPVMTESEGSSPLSDLTFGDVGEPQWEGDSENFNLLKYPSYEIDWDSL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi676g00004 356 Gene3D AP2/ERF domain 152 210 IPR036955 GO:0003700|GO:0006355
Vivi676g00004 356 ProSiteProfiles AP2/ERF domain profile. 152 209 IPR001471 GO:0003700|GO:0006355
Vivi676g00004 356 SMART rav1_2 152 215 IPR001471 GO:0003700|GO:0006355
Vivi676g00004 356 MobiDBLite consensus disorder prediction 248 333 - -
Vivi676g00004 356 CDD AP2 151 211 IPR001471 GO:0003700|GO:0006355
Vivi676g00004 356 PRINTS Ethylene responsive element binding protein signature 175 191 IPR001471 GO:0003700|GO:0006355
Vivi676g00004 356 PRINTS Ethylene responsive element binding protein signature 153 164 IPR001471 GO:0003700|GO:0006355
Vivi676g00004 356 FunFam Ethylene-responsive transcription factor 2 151 210 - -
Vivi676g00004 356 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 5 356 - -
Vivi676g00004 356 MobiDBLite consensus disorder prediction 283 297 - -
Vivi676g00004 356 Pfam AP2 domain 153 201 IPR001471 GO:0003700|GO:0006355
Vivi676g00004 356 SUPERFAMILY DNA-binding domain 152 209 IPR016177 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi676g00004 1 356 AP2-EREBP Transcription Factor Family AT1G78080 52.255 5.79e-96 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi676g00004 AP2 8.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi676g00004 K09286 - gmx:100800478 364.77