Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi673g00022 ATGAACCCGTTGACACTAGTGAAGCGCATTCAGAAAATCAATTCAAGAGAAGCTGCGCTAGGCATCAGCGAACAAGCTTCATGGCATACCAAATACAAAGACTCGGCGTATGTTTTCGTTGGTGGCATTCCCTTTGATCTCACCGAGGGTGATCTCCTCGCCGTTTTTGCTCAATATGGGGAGGTGGTTGATGTTAATCTCGTTAGAGACAAAGATACCGGAAAATCGAAGGGTTTTGCGTTCCTTGCATATGAAGATCAAAGAAGCACTAATCTTGCAGTCGATAATCTGAATGGAGCTCAGGTTTTAGGTAGGATTATTAGGGTGGATCATGTTGATAAGTATAAGAAGAAGGAGGAGGAAGATGAAGAGACAGAGCGGCAGAAAAGGGAGGCCCGTGGTGTTTGTCGAGCTTTCCAAAAAGGGGAATGTACTCGTGGAGCTGGATGCAAATTTTCTCATGATGAGCAAAGAGCTGCAAATACTGGTTGGGGTGAGAAGGACAATTCAAAATGGGACAATGACAAATATGATGGCCCCACAAAAGACAGAAGACATGACATCAACCAATCAAATCGCTTTCCAGAAACTAGAGACAGAGACTCACGCCCCAGAGCCCATAGCAATATGATGGAATTAGGTAACCAATCCAAGCGAAGTGATAGAAGAGAGGAAAAGATGCCGCGGAGGCATAATGACGATGAACTTGAACATCGGTCAAAAGAAGATCAACATAGGAGAGAAGAAAAAAGATCAAGGAATGATTACAGCGATAGAGAACCTGAGCCAAGAGATCACAGAAGGGAGGATAGAAGATCAATAAAGCGAGATGATGTAGAGTTTGAGCCCAGGTCAAGAGATTCTGATGTAAGAGAAGACAAAAGACTGAGTAGGCAGGATGTTGATGATTATAGAAGCAAGTCAAAAGAAATGCATGGTAACCGGGAGGAGAGAAGATCAAGAAAACACACCGAAGATGACTATGTGCCAAGGTCAAGAGAAGATCATGATAGGAAGCATGGTAGCCGGGAAGAGAGAAGATCAAGAAAGCACACTGAGGATGAATCTGTACCAAGGTCAAGAGAAGATCATGATGGGAAGCAAGATAACGTATCATATAGAAATAATTCTCATCGTTCTGAATCAAAAGGAAGATATGATTCTGACCGAAGAGAAGAAAAGAGGCCAGGAAGGTAA 1197 0.4311 MNPLTLVKRIQKINSREAALGISEQASWHTKYKDSAYVFVGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKDTGKSKGFAFLAYEDQRSTNLAVDNLNGAQVLGRIIRVDHVDKYKKKEEEDEETERQKREARGVCRAFQKGECTRGAGCKFSHDEQRAANTGWGEKDNSKWDNDKYDGPTKDRRHDINQSNRFPETRDRDSRPRAHSNMMELGNQSKRSDRREEKMPRRHNDDELEHRSKEDQHRREEKRSRNDYSDREPEPRDHRREDRRSIKRDDVEFEPRSRDSDVREDKRLSRQDVDDYRSKSKEMHGNREERRSRKHTEDDYVPRSREDHDRKHGSREERRSRKHTEDESVPRSREDHDGKQDNVSYRNNSHRSESKGRYDSDRREEKRPGR 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi673g00022 398 Gene3D - 5 111 IPR012677 -
Vivi673g00022 398 MobiDBLite consensus disorder prediction 158 398 - -
Vivi673g00022 398 Gene3D - 118 220 - -
Vivi673g00022 398 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Vivi673g00022 398 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 248 - -
Vivi673g00022 398 FunFam Zinc finger CCCH domain-containing protein 25 26 130 - -
Vivi673g00022 398 SUPERFAMILY RNA-binding domain, RBD 25 116 IPR035979 GO:0003676
Vivi673g00022 398 Coils Coil 115 135 - -
Vivi673g00022 398 SMART rrm1_1 37 110 IPR000504 GO:0003723
Vivi673g00022 398 SUPERFAMILY CCCH zinc finger 133 155 IPR036855 GO:0046872
Vivi673g00022 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Vivi673g00022 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
Vivi673g00022 398 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Vivi673g00022 398 MobiDBLite consensus disorder prediction 216 398 - -
Vivi673g00022 398 MobiDBLite consensus disorder prediction 168 207 - -
Vivi673g00022 398 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 155 IPR000571 GO:0046872
Vivi673g00022 398 CDD RRM_ist3_like 27 113 IPR045844 GO:0000398|GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi673g00022 38 84 C2H2 Transcription Factor Family AT2G19380 40.426 1.43e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi673g00022 K13107 - gmx:100792988 466.848