Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi673g00007 ATGTCGCACTTCGGAAGATCCGGTCCTCCAGACATCTCCGACACATACTCTCTACTCGTCCTCAACATCACTTTCCGTACAACCCCCGACGACCTATTTCCTCTCTTTGACAGATACGGCAAAGTCGTCGACATCTTCGTCCCCAAAGACAGAAGGACTGGTGAGTCGAGAGGTTTTGCTTTCGTGCGTTATAAGTATGCTGATGAGGCTTCCAAGGCTGTTGATAGGCTCGACGGAAGAATGGTTGATGGTCGTGAAATAACTGTGCAGTTTGCTAAATATGGCCCTAATGCTGAGAGGATTCAGAAAGGAAGGATTATTGAAACATCCCCGAGATCAAAGAGTTCAAGGAGCCGCAGTCCCAGCAGGAGAAGGCACCGTGATGATTACAGAGGCAAGGATTACAGGAGGAGAAGTCGCAGCAGGAGTTATGATAGGTACCGCGGCGGGAGAGACAGGGACTATCGTCGCCGAAGCAGAAGCCGTAGTGCCAGTCCTGATTACAAGGGGCGTGGAAGGGGACGCTATGATGATGAGCGCCGTAGTGCCAGTCCTGATTACAAGGATCGTGGAAGGGGACGCTATGATGATGAGCGCCGTGGTAGAAACCGAAGCAGATCAGTAGAAAGCCGATCCCCTGCCCGGCGAAGTCCTAGTCCAAGAAGGAGCCCTTCTCCTAAAAAGAGTATTTCCCCTCAAAGGAGTACTTCTCCCCTGAAAAGTCCACGCCATGAAAGTCCTGATAATCGTAGCCGCGATGAAAGGTCTCTTACTCCTCGAAGTGTCTCACCACGAGGTCGCCCTGATGTTTCCCCAAGCCCATCTCCTCGAAATTCAAATGGTGATGAGTAA 852 0.5117 MSHFGRSGPPDISDTYSLLVLNITFRTTPDDLFPLFDRYGKVVDIFVPKDRRTGESRGFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGPNAERIQKGRIIETSPRSKSSRSRSPSRRRHRDDYRGKDYRRRSRSRSYDRYRGGRDRDYRRRSRSRSASPDYKGRGRGRYDDERRSASPDYKDRGRGRYDDERRGRNRSRSVESRSPARRSPSPRRSPSPKKSISPQRSTSPLKSPRHESPDNRSRDERSLTPRSVSPRGRPDVSPSPSPRNSNGDE 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi673g00007 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Vivi673g00007 283 MobiDBLite consensus disorder prediction 122 211 - -
Vivi673g00007 283 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Vivi673g00007 283 MobiDBLite consensus disorder prediction 100 283 - -
Vivi673g00007 283 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 243 - -
Vivi673g00007 283 SMART rrm1_1 17 90 IPR000504 GO:0003723
Vivi673g00007 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Vivi673g00007 283 CDD RRM_SRSF2_SRSF8 18 90 - -
Vivi673g00007 283 SUPERFAMILY RNA-binding domain, RBD 8 102 IPR035979 GO:0003676
Vivi673g00007 283 MobiDBLite consensus disorder prediction 241 260 - -
Vivi673g00007 283 Gene3D - 4 105 IPR012677 -
Vivi673g00007 283 MobiDBLite consensus disorder prediction 212 240 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi673g00007 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 35.000 4.44e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi673g00007 K12891 - gmx:100778928 300.056