Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi666g00002 ATGGCGGAACATCTAGCCTCAATATTCGGCACAGAGAAAGACCGAGTTAACTGTCCCTTCTACTTCAAGATCGGCGCGTGTAGACACGGCGACCGTTGTTCGCGTCTCCACAACCGTCCCACCATTTCCCCAACTCTCCTTCTCTCCAACATGTACCAACGTCCCGATATCATCACTCCCGGCGTCGATCCCAACGGTCAACCGATCGATCCGCGCCAGATCCAGCAGCACTTCGAAGATTTCTATGAAGATATCTTTCTCGAGCTTTCTAAATTCGGTTACATCGAAACGCTAAACGTTTGTGATAATCTCGCCGATCATATGATCGGGAATGTTTACGTTTTGTTTCGTGAGGAAGATCATGCCGCGGCGGCGCTTGGTTCGTTGCACGGTAGATTTTACTCCGGTCGGCCTATTCTTGCGGATTTTTCTCCGGTGACGGATTTTCGTGAGGCGACGTGTCGGCAGTATGAGGAGAATAGTTGTAACCGTGGTGGTTATTGTAATTTTATGCATGTTAAGAAAATTGGAAGGGAATTGAGGAGGAAACTGTTTTCTTCTCAACGGAGCCGGAGCAGAAGCAGGAGTCGGAGTAATAGTCCTCGCCGGAGAAGGAGAAGTGGAGATCGAGAGAGGCCGCGTGATAGAGATAGAGATTATGAGTCTCGTGGAAGAAGAAGTAGTGATAGGGATAGGATTAGGGATAGAGATGGGAATAGGGAGAGGAATAGAGATAGTAGAGATGAAGGTGGAAGGCGGAGAAATGGTAGTTCGGCGAGGGAAGGAAGGGAAGGGAGCGAGGAAAGAAGAGCGAGGATTGAACAATGGAACAGGGAAAGAGAGGAGAAGCCTTGA 855 0.4912 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDIITPGVDPNGQPIDPRQIQQHFEDFYEDIFLELSKFGYIETLNVCDNLADHMIGNVYVLFREEDHAAAALGSLHGRFYSGRPILADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKKIGRELRRKLFSSQRSRSRSRSRSNSPRRRRRSGDRERPRDRDRDYESRGRRSSDRDRIRDRDGNRERNRDSRDEGGRRRNGSSAREGREGSEERRARIEQWNREREEKP 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi666g00002 284 ProSiteProfiles Zinc finger C3H1-type profile. 148 175 IPR000571 GO:0046872
Vivi666g00002 284 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 150 173 IPR000571 GO:0046872
Vivi666g00002 284 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 14 38 IPR000571 GO:0046872
Vivi666g00002 284 ProSiteProfiles Zinc finger C3H1-type profile. 12 40 IPR000571 GO:0046872
Vivi666g00002 284 Gene3D - 43 145 IPR012677 -
Vivi666g00002 284 FunFam Splicing factor U2AF small subunit 45 145 - -
Vivi666g00002 284 MobiDBLite consensus disorder prediction 184 284 - -
Vivi666g00002 284 MobiDBLite consensus disorder prediction 204 284 - -
Vivi666g00002 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 146 IPR000504 GO:0003723
Vivi666g00002 284 SMART c3hfinal6 148 174 IPR000571 GO:0046872
Vivi666g00002 284 SMART c3hfinal6 13 39 IPR000571 GO:0046872
Vivi666g00002 284 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 1 272 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vivi666g00002 284 SUPERFAMILY RNA-binding domain, RBD 77 149 IPR035979 GO:0003676
Vivi666g00002 284 CDD RRM_U2AF35B 44 145 - -
Vivi666g00002 284 MobiDBLite consensus disorder prediction 187 203 - -
Vivi666g00002 284 PRINTS U2 auxiliary factor small subunit signature 165 177 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vivi666g00002 284 PRINTS U2 auxiliary factor small subunit signature 103 125 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vivi666g00002 284 PRINTS U2 auxiliary factor small subunit signature 18 37 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vivi666g00002 284 PRINTS U2 auxiliary factor small subunit signature 130 154 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vivi666g00002 284 PRINTS U2 auxiliary factor small subunit signature 37 57 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vivi666g00002 284 PRINTS U2 auxiliary factor small subunit signature 75 90 IPR009145 GO:0000398|GO:0003723|GO:0089701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi666g00002 zf-CCCH 9.1e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi666g00002 K12836 - ath:AT5G42820 350.903