Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi665g00004 ATGGAAAATAATGCTAATGAAAATTTCTTTAGCACATCCTCATCATCATCATCAACATCAACACCAACTTCTTCTAACTCAAACTCATTCACCAATCATGACACCAAAAATAGTCCTCAAAGTAAGTGCAAGAAAAGAGAGAGAAACAATGAAAATGACACAAAACACCCTACATATAGAGGAGTGAGAATGAGAGCATGGGGAAAATATGTATCTGAGATAAGAGAGCCAAGAAAGAAATCAAGAATATGGCTTGGAACATACCCTACTGCTGAAATGGCTGCTAGAGCTCATGATGTAGCTGCTTTAGCTATAAAGGGTAATTCAGCTTACCTCAATTTCCCTAACTTGGCTCAAAGTCTTCCAAGGCCTTCAACAACATCACCTAAAGACATTCAACTTGCAGCTGCAAAAGCAGCAGCCACTGTTTTTGTGGAAATTAAGGATTCTTGTCAAGGTGATGAAAATGGTCAAGATCAAGATCAAGTTTCAAGTTCAACTCATTCTTCAATAGAGAATGTTCAAGAGTGTAATTCTAGTTCTCCTTCTTCTACTAATACTACTACTACAAATGATGATGATAATGATGATACACTCTTTGATCTACCGGATCTATTTCCGGATGGAAAACATGGACTTGTTTCTTATTCTTCTTCTTGGAATTTATGTGCTGTTGATAGTGGACTTCGGCTCGACGAGCAATTTTTATCGTCCTGGGAGTATTACTAG 729 0.3745 MENNANENFFSTSSSSSSTSTPTSSNSNSFTNHDTKNSPQSKCKKRERNNENDTKHPTYRGVRMRAWGKYVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGNSAYLNFPNLAQSLPRPSTTSPKDIQLAAAKAAATVFVEIKDSCQGDENGQDQDQVSSSTHSSIENVQECNSSSPSSTNTTTTNDDDNDDTLFDLPDLFPDGKHGLVSYSSSWNLCAVDSGLRLDEQFLSSWEYY 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi665g00004 242 MobiDBLite consensus disorder prediction 1 37 - -
Vivi665g00004 242 SUPERFAMILY DNA-binding domain 58 116 IPR016177 GO:0003677
Vivi665g00004 242 MobiDBLite consensus disorder prediction 38 60 - -
Vivi665g00004 242 MobiDBLite consensus disorder prediction 156 193 - -
Vivi665g00004 242 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Vivi665g00004 242 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 30 208 - -
Vivi665g00004 242 Gene3D AP2/ERF domain 58 116 IPR036955 GO:0003700|GO:0006355
Vivi665g00004 242 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
Vivi665g00004 242 Pfam AP2 domain 57 107 IPR001471 GO:0003700|GO:0006355
Vivi665g00004 242 MobiDBLite consensus disorder prediction 151 201 - -
Vivi665g00004 242 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Vivi665g00004 242 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Vivi665g00004 242 CDD AP2 59 117 IPR001471 GO:0003700|GO:0006355
Vivi665g00004 242 MobiDBLite consensus disorder prediction 1 60 - -
Vivi665g00004 242 FunFam Ethylene-responsive transcription factor 2 57 116 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi665g00004 45 238 AP2-EREBP Transcription Factor Family AT2G44940 52.336 2.01e-65 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi665g00004 AP2 7.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi665g00004 - - psat:127129327 335.109