Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi665g00001 ATGGTGTCCATAACTCCTCCAAAGCTTCAGTCCATGAAGTTTCTAACCTTTTGGTTGTTTTTTTCAATGTACTTTTGTACACTCATAAATAAGTCTCCTGTTGTTGTTTCTTCCATGACACTTTCATCTGCTTCATCCACATTACAAATCAGAGAAGCAAGTACTTTGTTGAAGTGGAAATCAAGTCTTGACAAACAAAGCCAAGCTTTGCTGTCTTCATGGAGTGGTAATAACTCATGCAACTGGCGGGGAATTACATGTACTAAAGATTCCATGCATGTCTCTCATGTAAACCTCGTAAACATGAGTTTGAAAGGTACGCTTGAAAGTCTTAACTTCTCATCACTTCCAAATATTATCACTCTTGATCTTAGCGCCAACTTGTTGAATGGAAGTATTCCTCCTCATATTGAGAGGTTGTCTAAACTTTCCTATCTTGATCTTAGTGACAATAAACTTTCAGGAAAAATTCCATATGAAATAACACAGTTGACTAGTCTTCATAATTTATATATGGGTGGAAATGTTTTCAATAGTTCCATTCCTGAAAATATAGGTGAATTGAGGAATCTAAGAGAATTTGACATCACTAATGCAAATCTCTTAGGCCCTATCCCAATCTCACTAGGGAACTTGTCCTTTTTGTCACACTTGTATCTAAATGGAAACAATCTTTCTGGAAAAATTCCAACTACAATTGGAAAATTAATAAAGATAAAAGTTCTATTTCTTTATGGCAATAATCTTTCAGGGTCTATTCCTCGAGAAATTGGGGACTTACTAAACCTAGAATATTTAAACCTTCATAACAACAATCTGTTCGGATCTATTCCTCAAGAAATTGGGAAGTTAGTGAACCTACAAATTTTATATCTTCATGTCAATAATTTATCTGGATCTATTCCTCGAGAAATTGGAGAATTAATACAGATAAAACATTTGTTTCTTTTTAGCAATAATCTCTCTGGGTCTATTCCTCGAGAAATCGGGGAATTACTGAACCTAGAATATCTAAACCTTCATGATAACAATTTTTTCGGATCAATTCCTCAAGAAATTGGGAAGTTAGTGAACCTACAAATTTTATATCTTCATGTCAATAGTTTATCTGGATCTATTCCTCGAGAAATTGGAGAATTAATACAGATAAAACATTTGTTTCTTTTTAGCAATAATCTCTCTGGGTCTATTCCTCGAGAAATCGGGGAATTACTGAACCTAGAATATCTAAACCTTCATGATAACAATTTTTTCGGATCAATTCCTCAAGAAATTGGGAAGTTAGTGAACCTACAAATTTTATATCTTCATGTCAATAGTTTATCTGGATCTATTCCTCGAGAAATTGGAGAATTAATACAGATAAAACATTTGTTTCTTTTTAGCAATAATCTCTCTGGGTCTATTCCTCGAGAAATCGGGGAATTACTGAACCTAGAATATCTAAACCTTCATGATAACAATTTTTTCGGATCAATTCCTCAAGAAATTGGGAAGTTAGTGAACCTACAAATTTTATATCTTCATGTCAATAGTTTATCTGGATCTATTCCTCGAGAACTTCGGAATTTAGTGAACATAAAGAGTCTATTTCTTAAAGATAATATTCTTTCTGGATCTATTCCTAGCGAAATTGGAATGATGAGATCTATGATACAACTTGATCTGTCAAATAATTCTCTCTCTGGTAAAATCCCACCTACAATTGGAAACTTGAGTCATTTACAAGATATTTTCTTTCAAAATAACCATCTAAGTGGTACAATTCCAACGGAATTGAATATGCTTTTGAATTTGGTAAGATTGTTTGTATTTGACAACAATTTCATTGGTCAGTTGCCTCATAACATTTGCTTTGGTGGAAAACTGAAGTCAATTGATGTTACTAATAACCGTTTTAGTGGGCAAGTTTTGAAGAGTTTGAAGAATTGTTCTAGCCTTTTTAGACTTTGGCTTCAACATAACCATTTTGATGGAAACATAACTGATGATTTTGGTGTATACCCAAATTTGAAGCTCTTGGGATTGGATGACAATAATTTTTATGGCCATCTTTCATCCAACTGGGGTAAGTTACATAATTTGACAAATCTTAACATCTCCAAAAATAATTTATCAGGTTCTATACCACCTGAGCTCGGTGAAGCTTCCAACTTGTATTCAATTGACTTATCTTCAAACCATCTCACGGGAGAAATTCCAAAGGAGTTAGGAAAATTGACCATGTTGGGCAGACTCATTTTAAACAACAATCATCTTTCTGGTAATGTTCATGTAAACATAGCATCGCTAAAGGAACTTGAAATCTTAGATGTTGCAGCAAATAATCTAAGCGGTTTCATCCCAAAAAAACTTGTCACTTCCTCTAGATTATTTAACTTAAATTTGAGCCATAACAAATTTAGAGGAAATATTCCTGGTGAGTTTGGTGAATTTAAAGCCCTTGAAAGTCTGGATCTGAGTGGAAATATTTTGGATGGAACCATACCACAAATGCTTGGGAAATTGACACACTTGGAAACATTGAATATTTCGCATAACAATCTTTCTGGATTTATCCCTTCTTCCTTTGATCAGATGACTAGTTTGTCATTTGTTGATATATCATACAACCAATTGAAAGGCCCACTTCCAGATATGCGAGTATTCAATAATGCAACCATTGAAGTGTTGAGGAATAATACAGACTTGTGCGGTAAAGTTTTTGGCTTGAATCCTTGCATAAAACCAAGCCATGGATCTCATAATAATAAGACTAAGAATTTGATCTTGTTGATGGTTTTACCTCTTGCACCTGGAACTCTAATGCTAGCATTTGTTTGTTTCAAACTCTTAAAGCATTTATGCGGAACACGAACCCTGAGAGAAAACCAGGATGGCAGAACTTGTGTTGCTCCGAATAATGTATTCACAATATGGAGTTTTGATGGGAAAATGGTGTATGAGAACATTATTGAAGCAACAGAAGAGTTTGATGACAAATATCTCATTGGTGTAGGAACGCATGGAACTGTCTACAGAGCTGAGTTACACACAGGCCAAATAGTTGCTATTAAAAAAATCCATTTAGCAACAAATGGAGAAAATTCTGATATAAGATGTTTCACAAATGAGATTCAAGCTCTGACTGAAATTCGTCATCGTAACATTGTGAAGCTATATGGATTTTGTTCACATTCACACGTATCGTTTTTGGTTTATGACTTTGTGGAGAAAGGCAGTCTAGATAAGATTTTGAAAAACGACGAACAAGCAACTGAATTTGGTTGGAATAATAGGGTGAATGTAATTAAAGATGTAGCAAATGCTTTATACTACATGCACCATGATTGTTTCCCTCCTATTGTTCATCGAGATATATCAAGCAAGAATATTCTTCTGGATTTAGAATATGTGGCTCGTGTCTCGGACTTTGGAACAGCTAAGCTTCTTAATCTTGATTCAGACAATTGGACCTCATTTGCAGGAACACTTGGATATTCTGCTCCAGAACTTGCATACACAATGGAAGTGAATGAGAAATGTGATGTATATAGTTTTGGAGTATTAGCATTGGAAATACTTTATGGGAAACACCCTGGAGACATCATATCTAATAACATAGCTGGATCAAAACTTGATACTATGTTATTGATGGATATGTTGGACCAACGTCTTCCTCGTCCAATGAATGCTAAAGCTAAGCAGCTGTTATCCATTACAAAGACAATAATTTCTTGCTTGGATGAAAGTCCACGATCTCGTCCAACCATGGAGCAGGTTTCAATGGAGATTTCAATATCATAA 3786 0.3463 MVSITPPKLQSMKFLTFWLFFSMYFCTLINKSPVVVSSMTLSSASSTLQIREASTLLKWKSSLDKQSQALLSSWSGNNSCNWRGITCTKDSMHVSHVNLVNMSLKGTLESLNFSSLPNIITLDLSANLLNGSIPPHIERLSKLSYLDLSDNKLSGKIPYEITQLTSLHNLYMGGNVFNSSIPENIGELRNLREFDITNANLLGPIPISLGNLSFLSHLYLNGNNLSGKIPTTIGKLIKIKVLFLYGNNLSGSIPREIGDLLNLEYLNLHNNNLFGSIPQEIGKLVNLQILYLHVNNLSGSIPREIGELIQIKHLFLFSNNLSGSIPREIGELLNLEYLNLHDNNFFGSIPQEIGKLVNLQILYLHVNSLSGSIPREIGELIQIKHLFLFSNNLSGSIPREIGELLNLEYLNLHDNNFFGSIPQEIGKLVNLQILYLHVNSLSGSIPREIGELIQIKHLFLFSNNLSGSIPREIGELLNLEYLNLHDNNFFGSIPQEIGKLVNLQILYLHVNSLSGSIPRELRNLVNIKSLFLKDNILSGSIPSEIGMMRSMIQLDLSNNSLSGKIPPTIGNLSHLQDIFFQNNHLSGTIPTELNMLLNLVRLFVFDNNFIGQLPHNICFGGKLKSIDVTNNRFSGQVLKSLKNCSSLFRLWLQHNHFDGNITDDFGVYPNLKLLGLDDNNFYGHLSSNWGKLHNLTNLNISKNNLSGSIPPELGEASNLYSIDLSSNHLTGEIPKELGKLTMLGRLILNNNHLSGNVHVNIASLKELEILDVAANNLSGFIPKKLVTSSRLFNLNLSHNKFRGNIPGEFGEFKALESLDLSGNILDGTIPQMLGKLTHLETLNISHNNLSGFIPSSFDQMTSLSFVDISYNQLKGPLPDMRVFNNATIEVLRNNTDLCGKVFGLNPCIKPSHGSHNNKTKNLILLMVLPLAPGTLMLAFVCFKLLKHLCGTRTLRENQDGRTCVAPNNVFTIWSFDGKMVYENIIEATEEFDDKYLIGVGTHGTVYRAELHTGQIVAIKKIHLATNGENSDIRCFTNEIQALTEIRHRNIVKLYGFCSHSHVSFLVYDFVEKGSLDKILKNDEQATEFGWNNRVNVIKDVANALYYMHHDCFPPIVHRDISSKNILLDLEYVARVSDFGTAKLLNLDSDNWTSFAGTLGYSAPELAYTMEVNEKCDVYSFGVLALEILYGKHPGDIISNNIAGSKLDTMLLMDMLDQRLPRPMNAKAKQLLSITKTIISCLDESPRSRPTMEQVSMEISIS 1261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi665g00001 1261 SUPERFAMILY RNI-like 554 891 - -
Vivi665g00001 1261 FunFam Nuclear pore complex protein NUP107 49 207 - -
Vivi665g00001 1261 Gene3D Phosphorylase Kinase; domain 1 959 1069 - -
Vivi665g00001 1261 SUPERFAMILY Protein kinase-like (PK-like) 971 1255 IPR011009 -
Vivi665g00001 1261 Gene3D Ribonuclease Inhibitor 397 492 IPR032675 -
Vivi665g00001 1261 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 400 495 - -
Vivi665g00001 1261 SMART LRR_typ_2 404 427 IPR003591 -
Vivi665g00001 1261 SMART LRR_typ_2 596 620 IPR003591 -
Vivi665g00001 1261 SMART LRR_typ_2 764 788 IPR003591 -
Vivi665g00001 1261 SMART LRR_typ_2 260 283 IPR003591 -
Vivi665g00001 1261 SMART LRR_typ_2 332 355 IPR003591 -
Vivi665g00001 1261 SMART LRR_typ_2 692 716 IPR003591 -
Vivi665g00001 1261 SMART LRR_typ_2 548 572 IPR003591 -
Vivi665g00001 1261 SMART LRR_typ_2 836 859 IPR003591 -
Vivi665g00001 1261 SMART LRR_typ_2 356 380 IPR003591 -
Vivi665g00001 1261 SMART LRR_typ_2 212 236 IPR003591 -
Vivi665g00001 1261 SMART LRR_typ_2 164 188 IPR003591 -
Vivi665g00001 1261 SMART LRR_typ_2 428 452 IPR003591 -
Vivi665g00001 1261 SMART LRR_typ_2 116 140 IPR003591 -
Vivi665g00001 1261 SMART LRR_typ_2 284 308 IPR003591 -
Vivi665g00001 1261 SMART LRR_typ_2 500 524 IPR003591 -
Vivi665g00001 1261 SMART LRR_typ_2 476 499 IPR003591 -
Vivi665g00001 1261 FunFam Predicted protein 228 327 - -
Vivi665g00001 1261 ProSiteProfiles Protein kinase domain profile. 991 1260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi665g00001 1261 FunFam Leucine-rich repeat receptor protein kinase MSP1 955 1069 - -
Vivi665g00001 1261 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 331 399 - -
Vivi665g00001 1261 Gene3D Ribonuclease Inhibitor 50 201 IPR032675 -
Vivi665g00001 1261 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 496 589 - -
Vivi665g00001 1261 Gene3D Ribonuclease Inhibitor 493 592 IPR032675 -
Vivi665g00001 1261 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 597 911 - -
Vivi665g00001 1261 SUPERFAMILY RNI-like 255 614 - -
Vivi665g00001 1261 Pfam Protein kinase domain 993 1254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi665g00001 1261 FunFam MDIS1-interacting receptor like kinase 2 1070 1261 - -
Vivi665g00001 1261 Pfam Leucine Rich Repeat 262 284 IPR001611 GO:0005515
Vivi665g00001 1261 Pfam Leucine rich repeat 814 873 IPR001611 GO:0005515
Vivi665g00001 1261 Gene3D Transferase(Phosphotransferase) domain 1 1070 1260 - -
Vivi665g00001 1261 Gene3D Ribonuclease Inhibitor 595 916 IPR032675 -
Vivi665g00001 1261 ProSitePatterns Protein kinases ATP-binding region signature. 997 1020 IPR017441 GO:0005524
Vivi665g00001 1261 Gene3D Ribonuclease Inhibitor 202 302 IPR032675 -
Vivi665g00001 1261 Gene3D Ribonuclease Inhibitor 303 396 IPR032675 -
Vivi665g00001 1261 Pfam Leucine rich repeat N-terminal domain 52 87 IPR013210 -
Vivi665g00001 1261 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 654 1258 - -
Vivi665g00001 1261 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1115 1127 IPR008266 GO:0004672|GO:0006468
Vivi665g00001 1261 SUPERFAMILY L domain-like 51 323 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi665g00001 523 901 Receptor kinase-like Gene Family AT4G08850 30.445 1.04e-46 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi665g00001 Pkinase 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi665g00001 - - vvo:131634792 2486.45