Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi662g00025 ATGGCGAATAATAAGGTTGATGCTCACGAACTATGGAAAAAAACCCTCGAAAATGCGTTAAATCCTAAGCCACAGACACTTGGAACTCTCCTTGGTTGTTCTGCTTCTGCTCAAGACTTGAGAAATATGGACCTTGAGAAAGATAAAGAAGACGAGGCGTCTCCAAGAGGGGTGTTAGAGGCCTGTGTTAGAGGCTTTGAGGATGGTGCGTCGCCTGAATCAGAAACGAGTTGTTCGGATTCGAGGGCAAGGTCGCATTGGGGAAAGTTTTTTAAATTGTGGAAGAAAAAATCAGTTAAACACCTACCTTCTATCCCTCCTTTACCTATAAATGTGCCAAAGTTACCAAAGTGGAAAAGCAAAAGCTCTAGGGAAAGTTATGTTAAGAGTAACATATGCAAATTCAGGTCTTCTTGGGTGACTTTCAGCCTCTCTGACCTCAGAAGTGCCACCAATGATTTCAGCCAAGAAAATTTGATTGGAAGAGGTGGTTTTTCTGAGGTTTACAAGGGATCTCTACAAAACGGAAGACTAATAGCGGTGAAGAAAATGACTACAGGCAGCACAGATGAGAAGACAGCTGGCTTTCTATCTGAGTTAGGAATTATTGCTCATGTTGATCATCCTAATACTGCAAAGCTTGTTGGATGTTGCATAGAGGGAGAAATGCACATTGTCTTTGAATTGTCTACACTAGGAAGTTTAGGATCCGTTCTTCATGGTTCTGGTTCGAATAAAGCTAAATTAGATTGGAGTAAAAGGTATAAAGTTGCTCTTGGAATAGCGGACGGTCTTCTCTATCTGCATGAGAATTGCGAAAGGCGGATAATTCATAGAGATATTAAGGCAGAGAATATTTTGCTCACAGAGAATTTTGAGCCACAGATTTGTGATTTTGGGCTTGCAAAGTGGTTACCAGAGCAATTGACTCACCATAATGTATCCACATTTGAAGGCACATTTGGGTATTTTGCACCTGAATATTGCATGCATGGCGTAGTGGATGAGAAAACTGATGTATATTCTTTTGGTGTTCTACTTTTGGAGATCATAACGGGGCGTAAGGCAGTGGTTCATATGCAGAGTCTTGTGACATGGGCAAAACCTTTGCTTGATGCTAATAACATCAAGGACGTCGTTGATCCTTCACTTGGAGATAACTACGATAAAGGACAAATAGGATGCGTCGGTTTGACTGCATCAATGTGTGTTGAACAATCTCCTATCTTACGCCCTCGCATGAATCAGGTTGTAACATTGCTTAGAGGGCAAGACTCAGTCCTAAATGCAAAAGCAAACAACACAAGAAGGACTATCCAAAGAACATATTCAGAAGAGTTACTTGATGTACAAGAATACAACTCTACGAAATATCTAAGCGATCTCAATAGGCATAAGCAAATTGCATTGGGTTTTGAGTGTTAA 1425 0.4077 MANNKVDAHELWKKTLENALNPKPQTLGTLLGCSASAQDLRNMDLEKDKEDEASPRGVLEACVRGFEDGASPESETSCSDSRARSHWGKFFKLWKKKSVKHLPSIPPLPINVPKLPKWKSKSSRESYVKSNICKFRSSWVTFSLSDLRSATNDFSQENLIGRGGFSEVYKGSLQNGRLIAVKKMTTGSTDEKTAGFLSELGIIAHVDHPNTAKLVGCCIEGEMHIVFELSTLGSLGSVLHGSGSNKAKLDWSKRYKVALGIADGLLYLHENCERRIIHRDIKAENILLTENFEPQICDFGLAKWLPEQLTHHNVSTFEGTFGYFAPEYCMHGVVDEKTDVYSFGVLLLEIITGRKAVVHMQSLVTWAKPLLDANNIKDVVDPSLGDNYDKGQIGCVGLTASMCVEQSPILRPRMNQVVTLLRGQDSVLNAKANNTRRTIQRTYSEELLDVQEYNSTKYLSDLNRHKQIALGFEC 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi662g00025 474 Gene3D Transferase(Phosphotransferase) domain 1 231 447 - -
Vivi662g00025 474 SUPERFAMILY Protein kinase-like (PK-like) 134 421 IPR011009 -
Vivi662g00025 474 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 231 435 - -
Vivi662g00025 474 Gene3D Phosphorylase Kinase; domain 1 116 228 - -
Vivi662g00025 474 SMART serkin_6 154 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi662g00025 474 PANTHER OS08G0249100 PROTEIN 38 466 IPR046958 -
Vivi662g00025 474 ProSitePatterns Protein kinases ATP-binding region signature. 160 183 IPR017441 GO:0005524
Vivi662g00025 474 ProSiteProfiles Protein kinase domain profile. 154 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi662g00025 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672|GO:0006468
Vivi662g00025 474 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 130 229 - -
Vivi662g00025 474 Pfam Protein tyrosine and serine/threonine kinase 157 362 IPR001245 GO:0004672|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi662g00025 119 427 Receptor kinase-like Gene Family AT1G53420 42.222 3.96e-74 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vivi662g00025 PK_Tyr_Ser-Thr 8.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi662g00025 - - cam:101512181 724.546