Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi662g00006 ATGGATAACAAAAATGACAAAACTATCCCTCTATGTTTTTTCTTTGTCTTCCTGTTTTTCTCCGGTGTCCCCTTCGCCGGAGCACAATCAGTCAACGGTACCACAAACAACGATAATAACTATTACAACCGTGTAAGCCCCTCCATGGCGATAATTATCGTGATTCTCATAGCTGCTCTTTTTCTGATGGGATTCTTCTCAATCTACATCCGTCAATGTGCTGATTCACCTTCCAACAGCATCCGCAACATGGCTGGTGTCACAGGACGATCACGACGCGCGGCGCGTGGTCTTGACGCTTCCGTGCTCGAAACGTTTCCGATTTTCGAATACTCGTTCGTGAAGATTCACAAAATCGGAAAAGGGACTCTAGAATGTGCTGTGTGTTTGAACGAGTTTGAAGAAACTGAAACGCTGCGTTTGATTCCGAAGTGTGATCATGTGTTTCATCCTGAGTGTATTGATGAGTGGCTCGGTTCACATACGACTTGCCCGGTTTGTCGAGCTAACTTGGTTCCTCAACCGGGTGAATCGGTTCACGGAATCCCGTTGTTTAATACAGAACAACAAGATATCGAGGCTCAAAACGACGTAGTTGAATCGGTTCATGAACATCAAAATATGGATGGTTCTGTTAAAGAGTCAACTGAACCGGAAGTGTTGACCGTGAACGAGACGTTGAACCGGAACCGTACGAGAGGCTCCCGGTCTGGAAGGCCTCGTTGGTTTCCGCGGTCTCATTCGACCGGTCATTCGTTGGTTCAACCGGGTGAGAATACTGAGCGGTTTACTTTAAGGCTGCCTTTGGAAATGAGGAAACAGATATTACAGAACCCGGAATTGCATCGGGCTAGAAGCTTGGTAGTGTTGCCGAGAGAAACTAGTTCACGGAGGGGATATCGAACCGGTGGTGGGGAGGGGAGTAGTAGAGGGAAGTCTGTAAGGTGGTTGGACCGGGGTTTTAAATCGGACCGGTGGGTTTTTACTATGGCGCCTCCTTTTCTTGTGAGAGCGTCGTCGATTAGGTCACCGAGGGTGGCTAATAGCGCTGGGGAAGGTACTTCTGCTTCAGCAGCTACGACGGCGGCGGCTGTTGACTCGCCGCGCCCTCCGGTTTGA 1119 0.4906 MDNKNDKTIPLCFFFVFLFFSGVPFAGAQSVNGTTNNDNNYYNRVSPSMAIIIVILIAALFLMGFFSIYIRQCADSPSNSIRNMAGVTGRSRRAARGLDASVLETFPIFEYSFVKIHKIGKGTLECAVCLNEFEETETLRLIPKCDHVFHPECIDEWLGSHTTCPVCRANLVPQPGESVHGIPLFNTEQQDIEAQNDVVESVHEHQNMDGSVKESTEPEVLTVNETLNRNRTRGSRSGRPRWFPRSHSTGHSLVQPGENTERFTLRLPLEMRKQILQNPELHRARSLVVLPRETSSRRGYRTGGGEGSSRGKSVRWLDRGFKSDRWVFTMAPPFLVRASSIRSPRVANSAGEGTSASAATTAAAVDSPRPPV 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi662g00006 372 MobiDBLite consensus disorder prediction 230 256 - -
Vivi662g00006 372 FunFam E3 ubiquitin-protein ligase ATL6 87 174 - -
Vivi662g00006 372 SUPERFAMILY RING/U-box 121 175 - -
Vivi662g00006 372 CDD RING-H2_EL5-like 125 168 - -
Vivi662g00006 372 SMART ring_2 126 167 IPR001841 -
Vivi662g00006 372 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 35 230 - -
Vivi662g00006 372 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Vivi662g00006 372 MobiDBLite consensus disorder prediction 346 362 - -
Vivi662g00006 372 Pfam Ring finger domain 125 168 IPR001841 -
Vivi662g00006 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 173 IPR013083 -
Vivi662g00006 372 MobiDBLite consensus disorder prediction 346 372 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi662g00006 8 369 Rapid Response to Elicitors AT3G05200 46.866 2.45e-93 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi662g00006 K10664 - gmx:100810865 469.929