Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi65g00017 ATGGGAAGAGGGAAGATTGTGATAAGAAGGATCGAGAACTGTACAAGCAGGCAAGTGACTTTCTCAAAGAGGAGAAAAGGTTTGATCAAGAAAGCCAAAGAGTTGGCGATCCTTTGTGATGCACAAGTTGGACTTGTTATATTCTCAGCTACTGGAAAGCTTTATGAATATGCAAACACCAGCATGAAATCAGTGATTGAGAGATATAACAGTTTCAAGGAAGACCAACAAGTGACATATCCAGAATCTGAAGTCAAGTTTTGGCAAAGGGAGTCTGACATTTTAAGGCAGCAACTACAGACTCTACAAGAAAACCATCGGCAATTGATGGGAGAACAGCTTTACGGTTTGAGCATCAGAAACCTTCAAGATCTAGAGAGACAACTCGAACTTAGTCTCCAAGGAGTCCGAATGAAAAAGGAGAAAATTCTGACAGACGAAATTCATGATCTGAACCAAAAGGGAAACCTAATCCATCAAGAAAATGTGGAACTCTATAAGAAGGTGTATGGCACAACAGATACGGCCACAACCGCAACAAGCAAAAATCCGTTTGTTCAATTTCCATTTGGTGTTGGCGGAGGAGGAGAATATGCACAAACATTATTTCAACTTCAGTTATGCCAGCCTGAGCACGAGCAGTACTGCGAAACCTCTGGCAGTGCAAGTGCAACTAAATGA 681 0.4156 MGRGKIVIRRIENCTSRQVTFSKRRKGLIKKAKELAILCDAQVGLVIFSATGKLYEYANTSMKSVIERYNSFKEDQQVTYPESEVKFWQRESDILRQQLQTLQENHRQLMGEQLYGLSIRNLQDLERQLELSLQGVRMKKEKILTDEIHDLNQKGNLIHQENVELYKKVYGTTDTATTATSKNPFVQFPFGVGGGGEYAQTLFQLQLCQPEHEQYCETSGSASATK 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi65g00017 226 ProSiteProfiles K-box domain profile. 85 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi65g00017 226 Gene3D - 14 108 IPR036879 GO:0003677|GO:0046983
Vivi65g00017 226 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Vivi65g00017 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi65g00017 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi65g00017 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi65g00017 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi65g00017 226 Pfam K-box region 82 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi65g00017 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Vivi65g00017 226 Coils Coil 85 112 - -
Vivi65g00017 226 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Vivi65g00017 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi65g00017 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi65g00017 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi65g00017 1 215 MADS-box Gene Family AT4G37940 60.185 3.43e-87 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi65g00017 K-box 3.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi65g00017 K09264 - gmx:100795778 312.768