Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi65g00015 ATGGGAAGAGGGAAGATTGTGATAAGAAGGATCGAGAACTGTACAAGCAGGCAAGTGACTTTCTCAAAGAGGAGAAAAGGTTTGATCAAGAAAGCCAAAGAGTTGGCGATCCTTTGTGATGCACAAGTTGGACTTGTTATATTCTCAGCTACTGGAAAGCTTTATGAATATGCAAACACCAGCATGAAATCAGTGATTGAGAGATATAACAGTTTCAAGGAAGACCAACAAGTGACATATCCAGAATCTGAAGTCAAGTTTTGGCAAAGGGAGTCTGACATTTTAAGGCAGCAACTACAGACTCTACAAGAAAACCATCGGCAATTGATGGGAGAACAGCTTTACGGTTTGAGCATCAGAAACCTTCAAGATCTAGAGAGACAACTCGAACTTAGTCTCCAAGGAGTCCGAATGAAAAAGGAGAAAATTCTGACAGACGAAATTCATGATCTGAACCAAAAGGGAAACCTAATCCATCAAGAAAATGTGGAACTCTATAAGAAGGTAAACCTTAGCCAACAAGAAAACACACAACTGCACAAAAAGGTGTATGGCACAACAGATACGGCCACAACCGCAACAAGCAAAAATCCGTTTGTTCAATTTCCATTTGGTGTTGGCGGAGGAGGAGAATATGCACAAACATTATTTCAACTTCAGTTATGCCAGCCTGAGCACGAGCAGTACTGCGAAACCTCTGGCAGTGCAAGTGCAACTAAATGA 723 0.4136 MGRGKIVIRRIENCTSRQVTFSKRRKGLIKKAKELAILCDAQVGLVIFSATGKLYEYANTSMKSVIERYNSFKEDQQVTYPESEVKFWQRESDILRQQLQTLQENHRQLMGEQLYGLSIRNLQDLERQLELSLQGVRMKKEKILTDEIHDLNQKGNLIHQENVELYKKVNLSQQENTQLHKKVYGTTDTATTATSKNPFVQFPFGVGGGGEYAQTLFQLQLCQPEHEQYCETSGSASATK 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi65g00015 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi65g00015 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi65g00015 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi65g00015 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 173 - -
Vivi65g00015 240 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Vivi65g00015 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi65g00015 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi65g00015 240 Pfam K-box region 82 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi65g00015 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi65g00015 240 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi65g00015 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi65g00015 240 Coils Coil 85 112 - -
Vivi65g00015 240 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Vivi65g00015 240 Gene3D - 14 108 IPR036879 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi65g00015 1 235 MADS-box Gene Family AT2G22630 56.356 1.51e-87 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi65g00015 K-box 1.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi65g00015 K09264 - gmx:100795778 307.76