Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi65g00004 ATGGTAAAGGGTTTTGGGTGCTCAATTTGGTGTGGAAGGGGGCGATTATGTATTGGGGGAGGTTGTGTTTCTGTTTGGTGGAGGAATTCGAAAAACATAAGGGATGGAGTTGGTTTGGTCGATGGAGGGTGGTTGCTTGATAACATGGGTCAGAAGATTGAATATGGGTCTTCTACCCTGTTTTGGAAAGATCTTTGGCTTGATGGTATTTCATTGAAGGTTAGATTTAGTAGAATGTTTGATTTAACGGTGAATAAGATGGAGACTATAGAAGAAATGAACAAGTTGGGGTGGGGGATAATGGCGAGGCGTGGAAGTGGCGTAGGAGGTTTCTCTACAACATCTCAAGGAAATTTATTGGACCATCTCTTAGAGTTTGGCGGGCTAGGTGATGATAAAACTTGTACCATCAATGTAAAAGGGCAAATTAAAATTTCTTTGGTTGATGGTGATGTGCATACGTTGAATGATGTCATTTATGTTCCAGAATTGAGGAAGAACTTGATTTCTCTAGGTAGTCTTCAAGCGAATGGTTATTCATTCCGGTCAGATGCAGATAGAGACATCATGGGGGTTAGCAAGGGTGCAATGATAGTGATGCCGACAAGAAGGAATGTATGCAACATTTATAAGTTGTTAGGGGGAATAGTTATGGGTGATGTAGCATATGCTGAAACTGATAATGTTGAAACCAAACTGTGGCACATGCGTTTGGGTCATCTTAGTGAATGTGGCATGATGAAACTACATAAGAAAAATTTGCTTATGGGTGTTCACATTTGCATTATTGGAAAGCTAGAGGTTTATAACCAGACAGGGAGAAAAATAAAGTATTTTCAGTCTGATAATGAAACTGGATACACTAACAAGAAGTTCATGCATTTCTGTGATGAGAATGGAATCCATAGGAACTTTTCTGTGAGGAAGACACCACAACATAATGGTGTTGCAATGAGGATGAGAAGGACTCTGGCGGAGAAGACAAGGTGCCTTTGGTTGAATGATGGTCTTTTAAAAGGTTTCTGGGTAGCAACACTCAATATGGCATGTGGACAGGTGAAGTTGAAACGCGATTGTCCATTGTCTCCCATCACTGACCGATATAGACAGAAATATAGCGAAGGTGCAAGATTCAAGAAAATGAACACAAAACTCACCAAAGGTCATGAAACTGTGATTGACATAAAGCATAAGCCTGTGAGTTTCACTGGTGGACTTGAGTTTGCGTCTCTTACTTACACCGTCGTAAAGAAGAAGAAAATCGATGGGAAGTTTTCGAACGAAGACGTGGATTTGTTGCATGATATAACAGGTTATGCACCAAAGGGGTGTATCACTGCTGTAATGGGACCAAGTGGTGCTGGAAAATCTACTTTGTTGGATGGACTTGCTGGGAGGATTGCAAGTGGGAGTCTTAAGGGGAAAGTTTCGTTGGATGGAAATAGCGTGAATGCGAGTTTGATTAAGAGAACTTCTGCTTATATTATGCAAGAGGATAGGCTTTTTCCTATGCTTACTGTCTATGAAACTTTGATGTTTGCTGCTGATTTCAGATTGGGGCCATTGTCAGTTGCTGATAAGAGGCAGAGAGTTGAGAAGCTTATTGAACAGCTTGGCTTATCATCATCTAGGAACACCTACATAGGAGATGAAGGAACAAGAGGAGTCTCAGGCGGAGAACGCCGCAGAGTCTCAATCGGCGTAGACATAATCCATGGACCTTCACTCCTTTTCCTAGATGAACCAACTTCAGGACTAGACTCAACGAGTGCTCTTAGTGTGATTGAAAAAGTACATGACATAGCCAGAAATGGAAGCACAGTTATTCTCACAATCCACCAACCTTCATCAAGAATCCAATCACTCCTTGACCATCTCATCATCCTTGCTAGAGGACAACTCATGTTTCAAGGATCATTCAAAGATGTAACTCTCCATTTGAACCGAATGGGACGAAAAGTTCCGAAAGGAGAGAATCCAATTGAGAATCTCATTGATGTGATACAAGAATATGATCAGAATGATGTTGTTGGCGTCGAGGTGCTAGCTGAGTTTGCACGTACCGGAATGAAACCGCCTCTTTTAAGTGATATGGAAGAAATAATTTCATTCACTAACTCTGTCGCGCCTTCGCCTTCTGTGCATAGAGGCTCTAGAAATGATGAAAAATCTCAAGACTTCTCTTATTCATCACAGATTAGTAGAAGGAGTTTGAATGATGAGTTTGATCATAGTCTTAGAAGTTCTTATAATAACACACCAATGTCTTGGAGTGCAAGTAATAGTGCAGCTTTCTTCAAATTCACACCCTCAAGACTTAAAAATGAGAACAAGGTGCAGAAACCTTCAAGCCAAGCTTCCCCTTCACCGGGCTACTACACATACTCAAGCGAAATCCTTCCGGCTACTCCAACACCACATAGCAGTGACTACACAGTGAATGAAAATGACTACCTCACACCGACAAACGGTTCGCCAGAACATCTAGGACCAAAGTTTGCGAATTCCTACATAGGAGAGACATGGATCCTAATGCGCCGCAACTTCATAAACATTCGTCGCACCCCCGAGCTTTTCCTATCAAGACTAATGGTCCTCACCTTCATGGGATTCATGATGGCCACAATGTTCCATAATCCAAAAGAAACCTTACAAGGAATCACAAACCGTCTCAGTTTCTTCATCTTCACAGTCTGTCTCTTTTTCTTCTCTTCCAATGACGCCGTCCCAGCATTCATCCAAGAGAGGTTCATTTTCATCCGCGAAACTTCGCACAATGCCTATAGAGCTTCTTCCTACACCATAGCTAGCTTAATCACCCACATGCCGTTTCTTGCGCTCCAAGCTTTAGCTTATGCAGCCATTGTTTGGTTTGCTTTACAACTCAGAGGCCCTTTTATATACTTCTTCCTTGTCCTCTTCATTTCTCTTCTTTCAACCAATTCGTTCGTCGTGTTTGTGAGTTCGGTAGTTCCAAACTATATCTTAGGCTATGCTGCAGTCATTGCCTTCACCGCATTGTTCTTCCTGTTCTGCGGATACTTCTTGAGCAGTGAGGATATGCCACTTTATTGGCGTTGGATGAACAAGATTTCGACTATGACGTACCCTTACGAAGGACTCTTGATGAATCAATATCAGACTAATGATACTTTTGGAACAAATGATGGTGTACCTGTCACTGGTTTTGATATATTGAATAGTCTTCATATTGGTACTGAGGAGTTTAAGAAGAGGAATAATGTGCTTATAATGTTAGGTTGGGCTGTGTTATATAGGATTTTATTTTACATTATTCTTCGTTTCGCATCGAAAAATCAAAGGTCCTAG 3330 0.4141 MVKGFGCSIWCGRGRLCIGGGCVSVWWRNSKNIRDGVGLVDGGWLLDNMGQKIEYGSSTLFWKDLWLDGISLKVRFSRMFDLTVNKMETIEEMNKLGWGIMARRGSGVGGFSTTSQGNLLDHLLEFGGLGDDKTCTINVKGQIKISLVDGDVHTLNDVIYVPELRKNLISLGSLQANGYSFRSDADRDIMGVSKGAMIVMPTRRNVCNIYKLLGGIVMGDVAYAETDNVETKLWHMRLGHLSECGMMKLHKKNLLMGVHICIIGKLEVYNQTGRKIKYFQSDNETGYTNKKFMHFCDENGIHRNFSVRKTPQHNGVAMRMRRTLAEKTRCLWLNDGLLKGFWVATLNMACGQVKLKRDCPLSPITDRYRQKYSEGARFKKMNTKLTKGHETVIDIKHKPVSFTGGLEFASLTYTVVKKKKIDGKFSNEDVDLLHDITGYAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVSLDGNSVNASLIKRTSAYIMQEDRLFPMLTVYETLMFAADFRLGPLSVADKRQRVEKLIEQLGLSSSRNTYIGDEGTRGVSGGERRRVSIGVDIIHGPSLLFLDEPTSGLDSTSALSVIEKVHDIARNGSTVILTIHQPSSRIQSLLDHLIILARGQLMFQGSFKDVTLHLNRMGRKVPKGENPIENLIDVIQEYDQNDVVGVEVLAEFARTGMKPPLLSDMEEIISFTNSVAPSPSVHRGSRNDEKSQDFSYSSQISRRSLNDEFDHSLRSSYNNTPMSWSASNSAAFFKFTPSRLKNENKVQKPSSQASPSPGYYTYSSEILPATPTPHSSDYTVNENDYLTPTNGSPEHLGPKFANSYIGETWILMRRNFINIRRTPELFLSRLMVLTFMGFMMATMFHNPKETLQGITNRLSFFIFTVCLFFFSSNDAVPAFIQERFIFIRETSHNAYRASSYTIASLITHMPFLALQALAYAAIVWFALQLRGPFIYFFLVLFISLLSTNSFVVFVSSVVPNYILGYAAVIAFTALFFLFCGYFLSSEDMPLYWRWMNKISTMTYPYEGLLMNQYQTNDTFGTNDGVPVTGFDILNSLHIGTEEFKKRNNVLIMLGWAVLYRILFYIILRFASKNQRS 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi65g00004 1109 CDD ABCG_EPDR 406 638 - -
Vivi65g00004 1109 Gene3D - 261 365 IPR036397 GO:0003676
Vivi65g00004 1109 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 426 646 IPR027417 -
Vivi65g00004 1109 ProSitePatterns ABC transporters family signature. 556 570 IPR017871 GO:0005524|GO:0016887
Vivi65g00004 1109 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 406 656 IPR003439 GO:0005524
Vivi65g00004 1109 Pfam GAG-pre-integrase domain 225 259 IPR025724 -
Vivi65g00004 1109 Pfam ABC-2 type transporter 613 671 IPR043926 GO:0140359
Vivi65g00004 1109 Gene3D - 418 651 IPR027417 -
Vivi65g00004 1109 MobiDBLite consensus disorder prediction 709 734 - -
Vivi65g00004 1109 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 390 1095 - -
Vivi65g00004 1109 SMART AAA_5 442 640 IPR003593 GO:0016887
Vivi65g00004 1109 SUPERFAMILY Ribonuclease H-like 266 350 IPR012337 -
Vivi65g00004 1109 Pfam ABC transporter 433 584 IPR003439 GO:0005524
Vivi65g00004 1109 Pfam ABC-2 type transporter 841 1046 IPR013525 GO:0016020|GO:0140359
Vivi65g00004 1109 ProSiteProfiles Integrase catalytic domain profile. 266 329 IPR001584 GO:0015074
Vivi65g00004 1109 FunFam ABC transporter G family member 6 416 654 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi65g00004 395 670 Calmodulin-binding Proteins AT2G36910 27.208 4.72e-13 72.0